Evidence map›Paper›PMID 26867216›Full record

ArticlePloS one2016

A New Mutation, hap1-2, Reveals a C Terminal Domain Function in AtMago Protein and Its Biological Effects in Male Gametophyte Development in Arabidopsis thaliana.

Kevin Cilano, Zachary Mazanek, Mahmuda Khan, Sarah Metcalfe, Xiao-Ning Zhang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kevin CilanoDepartment of Biology, Saint Bonaventure University, Saint Bonaventure, New York, United States of America.
Zachary MazanekBiochemistry Program, Saint Bonaventure University, Saint Bonaventure, New York, United States of America.
Mahmuda KhanDepartment of Biology, Saint Bonaventure University, Saint Bonaventure, New York, United States of America.
Sarah MetcalfeBiochemistry Program, Saint Bonaventure University, Saint Bonaventure, New York, United States of America.
Xiao-Ning ZhangDepartment of Biology, Saint Bonaventure University, Saint Bonaventure, New York, United States of America.
St. Bonaventure University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The exon-exon junction complex (EJC) is a conserved eukaryotic multiprotein complex that examines the quality of and determines the availability of messenger RNAs (mRNAs) posttranscriptionally. Four proteins, MAGO, Y14, eIF4AIII and BTZ, function as core components of the EJC. The mechanisms of their interactions and the biological indications of these interactions are still poorly understood in plants. A new mutation, hap1-2. leads to premature pollen death and a reduced seed production in Arabidopsis. This mutation introduces a viable truncated transcript AtMagoΔC. This truncation abolishes the interaction between AtMago and AtY14 in vitro, but not the interaction between AtMago and AteIF4AIII. In addition to a strong nuclear presence of AtMago, both AtMago and AtMagoΔC exhibit processing-body (P-body) localization. This indicates that AtMagoΔC may replace AtMago in the EJC when aberrant transcripts are to be degraded. When introducing an NMD mutation, upf3-1, into the existing HAP1/hap1-2 mutant, plants showed a severely reduced fertility. However, the change of splicing pattern of a subset of SR protein transcripts is mostly correlated with the sr45-1 and upf3-1 mutations, not the hap1-2 mutation. These results imply that the C terminal domain (CTD) of AtMago is required for the AtMago-AtY14 heterodimerization during EJC assembly, UPF3-mediated NMD pathway and the AtMago-AtY14 heterodimerization work synergistically to regulate male gametophyte development in plants.

Indexed as

MutationAmino Acid SequenceAnimalsArabidopsisArabidopsis ProteinsBase SequenceCloning, MolecularCrosses, GeneticDimerizationDNA, ComplementaryDNA PrimersExonsGenes, PlantGerm Cells, PlantHumansMicroscopy, ConfocalArabidopsis ProteinsDNA, ComplementaryDNA PrimersMago protein, ArabidopsisNuclear ProteinsRNA-Binding ProteinsRNA, Messenger

Identifiers

PMID26867216
PMCPMC4750992
OpenAlexW2256713214

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.