Evidence map›Paper›PMID 26867183›Full record

ArticleCell host & microbe2016

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

Jennifer Tisoncik-Go, David J Gasper, Jennifer E Kyle, Amie J Eisfeld, Christian Selinger, Masato Hatta, Juliet Morrison, Marcus J Korth, Erika M Zink, Young-Mo Kim and 15 more

Abstract read
In one paragraph

Article in Cell host & microbe, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

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  18. The Role of Glutathione Reductase in Influenza Infection.American journal of respiratory cell and molecular biology · 2022
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors.

Jennifer Tisoncik-GoDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
David J GasperDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, Madison, WI 53706, USA.
Jennifer E KyleBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Amie J EisfeldDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, Madison, WI 53706, USA.
Christian SelingerDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Masato HattaDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, Madison, WI 53706, USA.
Juliet MorrisonDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Marcus J KorthDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Erika M ZinkBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Young-Mo KimBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Athena A SchepmoesBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Carrie D NicoraBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Samuel O PurvineEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Karl K WeitzBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Xinxia PengDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Richard R GreenDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA.
Susan C TiltonBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Bobbie-Jo Webb-RobertsonComputational and Statistical Analytics Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Katrina M WatersBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Thomas O MetzBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Richard D SmithBiological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Yoshihiro KawaokaDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, Madison, WI 53706, USA; Division of Virology, Department of Microbiology and Immunology, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo 108-8639, Japan; Japan Department of Special Pathogens, International Research Center for Infectious Diseases, Institute of Medical Science, University of Tokyo, Minato-ku, Tokyo 108-8639, Japan; Laboratory of Bioresponses Regulation, Department of Biological Responses, Institute for Virus Research, Kyoto University, Kyoto 606-8507, Japan.
M SureshDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin, Madison, WI 53706, USA.
Laurence JossetLaboratoire de Virologie, Centre de Biologie Est des Hospices Civils de Lyon, Université Claude Bernard Lyon 1, 69495 Lyon, France.
Michael G KatzeDepartment of Microbiology, University of Washington, Seattle, WA 98195, USA; Washington National Primate Research Center, Seattle, WA 98195, USA. Electronic address: honey@uw.edu.

Funding

Washington National Primate Research CenterP51OD010425 · OD · UNIVERSITY OF WASHINGTON · PI Mari Ostendorf · 2012 to 2026
$201.8M
Translational CoreU19AI109761 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BARIC, RALPH S · 2014 to 2018
$32.6M
Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
Comparative Biomedical Sciences Training ProgramT32OD010423 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI Marulasiddappa Suresh · 2012 to 2026
$5.0M
NIAID NIH HHS HHSN272200800060CNIAID NIH HHS HHSN272201400005CNIAID NIH HHS HHSN272201400006CNIAID NIH HHS U19 AI109761NIAID NIH HHS U19AI109761NIGMS NIH HHS P41 GM103493NIH HHS 5T32OD010423-07NIH HHS P51 OD010425NIH HHS P51OD010425NIH HHS T32 OD010423PHS HHS HHSN272201400005CPHS HHS HHSN272201400006C
6 · The paper itself

Abstract

Pandemic influenza viruses modulate proinflammatory responses that can lead to immunopathogenesis. We present an extensive and systematic profiling of lipids, metabolites, and proteins in respiratory compartments of ferrets infected with either 1918 or 2009 human pandemic H1N1 influenza viruses. Integrative analysis of high-throughput omics data with virologic and histopathologic data uncovered relationships between host responses and phenotypic outcomes of viral infection. Proinflammatory lipid precursors in the trachea following 1918 infection correlated with severe tracheal lesions. Using an algorithm to infer cell quantity changes from gene expression data, we found enrichment of distinct T cell subpopulations in the trachea. There was also a predicted increase in inflammatory monocytes in the lung of 1918 virus-infected animals that was sustained throughout infection. This study presents a unique resource to the influenza research community and demonstrates the utility of an integrative systems approach for characterization of lipid metabolism alterations underlying respiratory responses to viruses.

Indexed as

Lipid MetabolismAnimalsDisease Models, AnimalFerretsGene ExpressionHost-Pathogen InteractionsHumansInfluenza A Virus, H1N1 SubtypeInfluenza, HumanLipidsLungMetabolomicsLipids

Identifiers

PMID26867183
PMCPMC5271177

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.