Evidence map›Paper›PMID 26867150›Full record

ArticlePLoS neglected tropical diseases2016

A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions.

Carine Makendi, Andrew J Page, Brendan W Wren, Tu Le Thi Phuong, Simon Clare, Christine Hale, David Goulding, Elizabeth J Klemm, Derek Pickard, Chinyere Okoro and 10 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Worldwide Epidemiology ofApplied and environmental microbiology · 2019
    Pooled it
  2. Host adaptation inApplied and environmental microbiology · 2026
    Review
  3. Article
  4. A Highly Drug-ResistantIndian journal of microbiology · 2025
    Review
  5. Emerging Strategies against Non-TyphoidalCurrent issues in molecular biology · 2024
    Review
  6. A review and meta-analysis of non-typhoidalOne health (Amsterdam, Netherlands) · 2024
    Review
  7. SW16-7, a NovelMicroorganisms · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Multidrug-resistant non-typhoidalFrontiers in microbiology · 2023
    Article
  13. Identification ofVeterinary research forum : an international quarterly journal · 2023
    Article
  14. Article
  15. Non-diarrhoeic pigs as source of highly virulent and multidrug-resistant non-typhoidal Salmonella.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Article
  16. Article
  17. Article
  18. Distribution ofInternational journal of environmental research and public health · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Carine MakendiWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Andrew J PageWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Brendan W WrenThe London School of Hygiene and Tropical Medicine, London, United Kingdom.
Tu Le Thi PhuongThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Simon ClareWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Christine HaleWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
David GouldingWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Elizabeth J KlemmWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Derek PickardWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Chinyere OkoroThe Department of Medicine, University of Cambridge, Cambridge, United Kingdom.
Martin HuntWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Corinne N ThompsonThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nguyen Phu Huong LanThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Nhu Tran Do HoangThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Guy E ThwaitesThe Hospital for Tropical Diseases, Wellcome Trust Major Overseas Programme, Oxford University Clinical Research Unit, Ho Chi Minh City, Vietnam.
Simon Le HelloInstitut Pasteur, Unité des Bactéries Pathogènes Entériques, Paris, France.
Anne BrisaboisUniversité Paris-Est, ANSES, Laboratoire de Sécurité des Aliments, Maisons-Alfort, France.
François-Xavier WeillWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.
Stephen BakerThe London School of Hygiene and Tropical Medicine, London, United Kingdom.
Gordon DouganWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom.

Funding

Wellcome Trust 100087
6 · The paper itself

Abstract

Salmonella enterica serovar Weltevreden (S. Weltevreden) is an emerging cause of diarrheal and invasive disease in humans residing in tropical regions. Despite the regional and international emergence of this Salmonella serovar, relatively little is known about its genetic diversity, genomics or virulence potential in model systems. Here we used whole genome sequencing and bioinformatics analyses to define the phylogenetic structure of a diverse global selection of S. Weltevreden. Phylogenetic analysis of more than 100 isolates demonstrated that the population of S. Weltevreden can be segregated into two main phylogenetic clusters, one associated predominantly with continental Southeast Asia and the other more internationally dispersed. Subcluster analysis suggested the local evolution of S. Weltevreden within specific geographical regions. Four of the isolates were sequenced using long read sequencing to produce high quality reference genomes. Phenotypic analysis in Hep-2 cells and in a murine infection model indicated that S. Weltevreden were significantly attenuated in these models compared to the classical S. Typhimurium reference strain SL1344. Our work outlines novel insights into this important emerging pathogen and provides a baseline understanding for future research studies.

Indexed as

PhylogenyAnimalsAsia, SoutheasternBacterial ProteinsDiarrheaGenetic VariationHumansMiceMice, Inbred C57BLMolecular Sequence DataPhenotypeSalmonella entericaSalmonella InfectionsBacterial Proteins

Identifiers

PMID26867150
PMCPMC4750946

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.