Evidence map›Paper›PMID 26866800›Full record

ArticlePloS one2016

Experimental Approach Reveals the Role of alx1 in the Evolution of the Echinoderm Larval Skeleton.

Hiroyuki Koga, Haruka Fujitani, Yoshiaki Morino, Norio Miyamoto, Jun Tsuchimoto, Tomoko F Shibata, Masafumi Nozawa, Shuji Shigenobu, Atsushi Ogura, Kazunori Tachibana and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
7.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

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  18. Genome-wide use of high- and low-affinity Tbrain transcription factor binding sites during echinoderm development.Proceedings of the National Academy of Sciences of the United States of America · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 9 institutions in 1 country.

Hiroyuki KogaGraduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.
Haruka FujitaniGraduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.
Yoshiaki MorinoGraduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.
Norio MiyamotoGraduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.
Jun TsuchimotoDivision of Life Science, Graduate School of Natural Science and Technology, Kanazawa University, Kanazawa, Japan.
Tomoko F ShibataNational Institute for Basic Biology, Okazaki, Japan.
Masafumi NozawaCenter for Information Biology, National Institute of Genetics, Mishima, Japan.
Shuji ShigenobuNational Institute for Basic Biology, Okazaki, Japan.
Atsushi OguraNagahama Institute of Bio-Science and Technology, Nagahama, Japan.
Kazunori TachibanaGraduate School of Bioscience, Tokyo Institute of Technology, Yokohama, Japan.
Masato KiyomotoMarine and Coastal Research Center, Ochanomizu University, Tateyama, Japan.
Shonan AmemiyaMarine and Coastal Research Center, Ochanomizu University, Tateyama, Japan.
Hiroshi WadaGraduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.
University of Tsukuba · JPNational Institute for Basic Biology · JPJapan Agency for Marine-Earth Science and Technology · JPKanazawa University · JPKeio University · JPNagahama Institute of Bio-Science and Technology · JPNational Institute of Genetics · JPOchanomizu University · JPTokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the course of evolution, the acquisition of novel structures has ultimately led to wide variation in morphology among extant multicellular organisms. Thus, the origins of genetic systems for new morphological structures are a subject of great interest in evolutionary biology. The larval skeleton is a novel structure acquired in some echinoderm lineages via the activation of the adult skeletogenic machinery. Previously, VEGF signaling was suggested to have played an important role in the acquisition of the larval skeleton. In the present study, we compared expression patterns of Alx genes among echinoderm classes to further explore the factors involved in the acquisition of a larval skeleton. We found that the alx1 gene, originally described as crucial for sea urchin skeletogenesis, may have also played an essential role in the evolution of the larval skeleton. Unlike those echinoderms that have a larval skeleton, we found that alx1 of starfish was barely expressed in early larvae that have no skeleton. When alx1 overexpression was induced via injection of alx1 mRNA into starfish eggs, the expression patterns of certain genes, including those possibly involved in skeletogenesis, were altered. This suggested that a portion of the skeletogenic program was induced solely by alx1. However, we observed no obvious external phenotype or skeleton. We concluded that alx1 was necessary but not sufficient for the acquisition of the larval skeleton, which, in fact, requires several genetic events. Based on these results, we discuss how the larval expression of alx1 contributed to the acquisition of the larval skeleton in the putative ancestral lineage of echinoderms.

Indexed as

Gene Expression RegulationAnimalsBiological EvolutionEchinodermataGene Expression ProfilingHomeodomain ProteinsImmunohistochemistryIn Situ HybridizationLarvaPhenotypePhylogenySea CucumbersSequence Analysis, RNAStarfishStrongylocentrotus purpuratusVascular Endothelial Growth Factor AHomeodomain ProteinsVascular Endothelial Growth Factor A

Identifiers

PMID26866800
PMCPMC4750990
OpenAlexW2269935613

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.