Evidence map›Paper›PMID 26866676›Full record

ArticleACS chemical biology2016

Hydroxyphenylation of Histone Lysines: Post-translational Modification by Quinone Imines.

Kodihalli C Ravindra, Laura J Trudel, John S Wishnok, Gerald N Wogan, Steven R Tannenbaum, Paul L Skipper

Abstract read
In one paragraph

Article in ACS chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 100% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kodihalli C RavindraFrom Department of Biological Engineering and ‡Department of Chemistry, Massachusetts Institute of Technology , Cambridge, Massachusetts 02139, United States.
Laura J TrudelFrom Department of Biological Engineering and ‡Department of Chemistry, Massachusetts Institute of Technology , Cambridge, Massachusetts 02139, United States.
John S WishnokFrom Department of Biological Engineering and ‡Department of Chemistry, Massachusetts Institute of Technology , Cambridge, Massachusetts 02139, United States.
Gerald N WoganFrom Department of Biological Engineering and ‡Department of Chemistry, Massachusetts Institute of Technology , Cambridge, Massachusetts 02139, United States.
Steven R TannenbaumFrom Department of Biological Engineering and ‡Department of Chemistry, Massachusetts Institute of Technology , Cambridge, Massachusetts 02139, United States.
Paul L SkipperFrom Department of Biological Engineering and ‡Department of Chemistry, Massachusetts Institute of Technology , Cambridge, Massachusetts 02139, United States.
Massachusetts Institute of Technology · US

Funding

TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI YAFFE, MICHAEL B · 1985 to 2020
$25.6M
Reaction and Diffusion of NO in Biological SystemsP01CA026731 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ESSIGMANN, JOHN M · 1985 to 2018
$25.4M
Validation and Application of Risk, Biomarkers in Human StudiesP01ES006052 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI KENSLER, THOMAS A · 1993 to 2012
$22.6M
NCI NIH HHS P01 CA026731NIEHS NIH HHS P01 ES006052NIEHS NIH HHS P30 ES002109
6 · The paper itself

Abstract

Monocyclic aromatic amines are widespread environmental contaminants with multiple sources such as combustion products, pharmaceuticals, and pesticides. Their phenolic metabolites are converted intracellularly to electrophilic quinone imines upon autoxidation and can embed in the cellular matrix through a transimination reaction that leaves a redox-active residue as a substituent of lysine side-chain amino groups. To demonstrate the occurrence of this process within the cellular nucleus, Chinese hamster ovary AA8 cells were treated with the para-phenol of 3,5-dimethylamine, after which the histone proteins were isolated, derivatized, and subjected to tryptic digestion. The resulting peptides were analyzed by tandem mass spectrometry to determine which lysines were modified. Nine residues in histones H2A, H2B, and H4 were identified; these were located in histone tails, close to where DNA makes contact with the nuclear core particle, elsewhere on the protein surface, and deep within the core. Kinetics of disappearance of the modified lysines in cultured cells was determined using isotope-dilution mass spectrometry. AA8 cells were also transfected with the genetically encoded hydrogen peroxide biosensor HyPer in constructs that lead to expression of HyPer in different cellular compartments. Challenging the resulting cells with the dimethylaminophenol resulted in sustained fluorescence emission in each of the compartments, demonstrating ongoing production of H2O2. The kinetics of modified lysine loss determined by mass spectrometry was consistent with persistence of HyPer fluorescence emission. We conclude that the para-phenol of 3,5-dimethylamine can become stably integrated into the histone proteins, which are minimally repaired, if at all, and function as a persistent source of intracellular H2O2.

Indexed as

Amino Acid SequenceAminophenolsAnimalsCHO CellsCricetinaeCricetulusHistonesHydrogen PeroxideIminesLysineModels, MolecularProtein Processing, Post-TranslationalQuinones3,5-dimethylaminophenolAminophenolsHistonesHydrogen PeroxideIminesLysineQuinones

Identifiers

PMID26866676
PMCPMC5495105
OpenAlexW2273544523

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.