Evidence map›Paper›PMID 26865699›Full record

ArticleG3 (Bethesda, Md.)2016

A Genetic Map for the Only Self-Fertilizing Vertebrate.

Akira Kanamori, Yosuke Sugita, Yasufumi Yuasa, Takamasa Suzuki, Kouichi Kawamura, Yoshinobu Uno, Katsuyasu Kamimura, Yoichi Matsuda, Catherine A Wilson, Angel Amores and 3 more

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. A brief review of vertebrate sex evolution with a pledge for integrative research: towards 'Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Complete mitochondrial genome of the mangrove killifishMitochondrial DNA. Part B, Resources · 2016
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Akira KanamoriDivision of Biological Science, Graduate School of Science, Nagoya University, Aichi 464-8602, Japan kanamori@bio.nagoya-u.ac.jp sakakura@nagasaki-u.ac.jp.
Yosuke SugitaDivision of Biological Science, Graduate School of Science, Nagoya University, Aichi 464-8602, Japan.
Yasufumi YuasaDivision of Biological Science, Graduate School of Science, Nagoya University, Aichi 464-8602, Japan.
Takamasa SuzukiJapan Science and Technology Agency (JST) Exploratory Research for Advanced Technology (ERATO) Higashiyama Live-Holonics Project, Nagoya University, Aichi 464-8602, Japan Department of Biological Chemistry, College of Bioscience and Biotechnology, Chubu University, Kasugai, Aichi 487-8501, Japan.
Kouichi KawamuraGraduate School of Bioresources, Mie University, Tsu, Mie 514-8507, Japan.
Yoshinobu UnoDepartment of Applied Molecular Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8602, Japan.
Katsuyasu KamimuraDivision of Biological Science, Graduate School of Science, Nagoya University, Aichi 464-8602, Japan.
Yoichi MatsudaDepartment of Applied Molecular Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Aichi 464-8602, Japan.
Catherine A WilsonInstitute of Neuroscience, University of Oregon, Eugene, Oregon 97403-1254.
Angel AmoresInstitute of Neuroscience, University of Oregon, Eugene, Oregon 97403-1254.
John H PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, Oregon 97403-1254.
Koushirou SugaGraduate School of Fisheries Science and Environmental Studies, Nagasaki University, 852-8521, Japan.
Yoshitaka SakakuraGraduate School of Fisheries Science and Environmental Studies, Nagasaki University, 852-8521, Japan kanamori@bio.nagoya-u.ac.jp sakakura@nagasaki-u.ac.jp.

Funding

Resources for Teleost Gene Duplicates and Human DiseaseR01OD011116 · OD · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2012 to 2020
$5.4M
Mechanisms of Sex Determination in ZebrafishR01GM085318 · NIGMS · UNIVERSITY OF OREGON · PI POSTLETHWAIT, JOHN H. · 2010 to 2018
$2.1M
NIGMS NIH HHS R01 GM085318NIH HHS R01 OD011116
6 · The paper itself

Abstract

The mangrove killifish Kryptolebias marmoratus, and its close relative Kryptolebias hermaphroditus, are the only vertebrate species known to reproduce by self-fertilization due to functional ovotestis development. To improve our understanding of their genomes, we constructed a genetic map. First, a single F1 fish was made by artificial fertilization between K. marmoratus and K. hermaphroditus strains. F2 progeny were then obtained by self-fertilization of the F1 fish. We used RAD-seq to query genomic DNAs from the two parental strains, the F1 individual and 49 F2 progeny. Results identified 9904 polymorphic RAD-tags (DNA markers) that mapped to 24 linkage groups, corresponding to the haploid chromosome number of these species. The total length of the map was 1248 cM, indicating that about one recombination occurred for each of the 24 homologous chromosome pairs in each meiosis. Markers were not evenly distributed along the chromosomes: in all chromosomes, many markers (> 8% of the total markers for each chromosome) mapped to chromosome tips. Centromeres suppress recombination, and this uneven distribution is probably due to the species' acrocentric chromosomes. Mapped marker sequences were compared to genomic sequences of medaka and platyfish, the next most closely related species with sequenced genomes that are anchored to genetic maps. Results showed that each mangrove killifish chromosome corresponds to a single chromosome of both platyfish and medaka, suggesting strong conservation of chromosomes over 100 million years of evolution. Our genetic map provides a framework for the K. marmoratus/K. hermaphroditus genome sequence and an important resource for understanding the biology of hermaphroditism.

Indexed as

Chromosome MappingGenetic Association StudiesAnimalsCentromereEvolution, MolecularGenetic LinkageGenomeGenomicsPhylogenyRecombination, GeneticSelf-FertilizationSyntenyVertebratescentromeres and recombinationconserved chromosomesgenetics of sexhermaphroditephylogeny by RAD-seqteleost

Identifiers

PMID26865699
PMCPMC4825644

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.