Evidence map›Paper›PMID 26865634›Full record

ArticleThe Journal of biological chemistry2016

A Protein-derived Oxygen Is the Source of the Amide Oxygen of Nitrile Hydratases.

Micah T Nelp, Yang Song, Vicki H Wysocki, Vahe Bandarian

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
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  5. The 3Chemical science · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Micah T NelpFrom the Department of Chemistry, University of Utah, Salt Lake City, Utah, 84112 and.
Yang Songthe Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210.
Vicki H Wysockithe Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210.
Vahe BandarianFrom the Department of Chemistry, University of Utah, Salt Lake City, Utah, 84112 and vahe@chem.utah.edu.
The Ohio State University · USUniversity of Utah · US

Funding

Biosynthesis of Deazapurine-Containing MetabolitesR01GM072623 · NIGMS · UNIVERSITY OF UTAH · PI BANDARIAN, VAHE · 2005 to 2017
$3.9M
Development of Surface-Induced Dissociation Ion Mobility MS, a Structrl Biol ToolR01GM113658 · NIGMS · OHIO STATE UNIVERSITY · PI WYSOCKI, VICKI H. · 2015 to 2018
$1.1M
NIGMS NIH HHS R01 GM072623NIGMS NIH HHS R01 GM113658NIGMS NIH HHS R01GM113658NIGMS NIH HHS R01GM72623
6 · The paper itself

Abstract

Nitrile hydratase metalloenzymes are unique and important biocatalysts that are used industrially to produce high value amides from their corresponding nitriles. After more than three decades since their discovery, the mechanism of this class of enzymes is becoming clear with evidence from multiple recent studies that the cysteine-derived sulfenato ligand of the active site metal serves as the nucleophile that initially attacks the nitrile. Herein we describe the first direct evidence from solution phase catalysis that the source of the product carboxamido oxygen is the protein. Using(18)O-labeled water under single turnover conditions and native high resolution protein mass spectrometry, we show that the incorporation of labeled oxygen into both product and protein is turnover-dependent and that only a single oxygen is exchanged into the protein even under multiple turnover conditions, lending significant support to proposals that the post-translationally modified sulfenato group serves as the nucleophile to initiate hydration of nitriles.

Indexed as

ActinomycetalesCatalytic DomainCrystallography, X-RayHydro-LyasesModels, MolecularOxygenPyrimidine NucleosidesToyocamycinHydro-Lyasesnitrile hydrataseOxygenPyrimidine NucleosidessangivamycinToyocamycinenzymeenzyme catalysisenzyme mechanismmetalloenzymenitrile hydratasepost-translational modification (PTM)protein chemical modification

Identifiers

PMID26865634
PMCPMC4824990
OpenAlexW2270264810

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.