Evidence map›Paper›PMID 26865263›Full record

ArticleScientific reports2016

New insights into the mechanism of substrates trafficking in Glyoxylate/Hydroxypyruvate reductases.

Louise Lassalle, Sylvain Engilberge, Dominique Madern, Pierre Vauclare, Bruno Franzetti, Eric Girard

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Dynamic Effects ofBiology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Removal of phosphoglycolate in hyperthermophilic archaea.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Louise LassalleUniv. Grenoble Alpes, IBS, F-38044 Grenoble, France.
Sylvain EngilbergeUniv. Grenoble Alpes, IBS, F-38044 Grenoble, France.
Dominique MadernUniv. Grenoble Alpes, IBS, F-38044 Grenoble, France.
Pierre VauclareUniv. Grenoble Alpes, IBS, F-38044 Grenoble, France.
Bruno FranzettiUniv. Grenoble Alpes, IBS, F-38044 Grenoble, France.
Eric GirardUniv. Grenoble Alpes, IBS, F-38044 Grenoble, France.
Centre National de la Recherche Scientifique · FRInstitut de Biologie Structurale · FRCEA Grenoble · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glyoxylate accumulation within cells is highly toxic. In humans, it is associated with hyperoxaluria type 2 (PH2) leading to renal failure. The glyoxylate content within cells is regulated by the NADPH/NADH dependent glyoxylate/hydroxypyruvate reductases (GRHPR). These are highly conserved enzymes with a dual activity as they are able to reduce glyoxylate to glycolate and to convert hydroxypyruvate into D-glycerate. Despite the determination of high-resolution X-ray structures, the substrate recognition mode of this class of enzymes remains unclear. We determined the structure at 2.0 Å resolution of a thermostable GRHPR from Archaea as a ternary complex in the presence of D-glycerate and NADPH. This shows a binding mode conserved between human and archeal enzymes. We also determined the first structure of GRHPR in presence of glyoxylate at 1.40 Å resolution. This revealed the pivotal role of Leu53 and Trp138 in substrate trafficking. These residues act as gatekeepers at the entrance of a tunnel connecting the active site to protein surface. Taken together, these results allowed us to propose a general model for GRHPR mode of action.

Indexed as

Alcohol OxidoreductasesArchaeal ProteinsCatalytic DomainCrystallography, X-RayEnzyme AssaysEscherichia coliGene ExpressionGlyceric AcidsGlyoxylatesHydroxypyruvate ReductaseKineticsModels, MolecularNADNADPProtein BindingProtein StabilityAlcohol OxidoreductasesArchaeal Proteinsglyceric acidGlyceric Acidsglyoxylate reductaseGlyoxylatesglyoxylic acidHydroxypyruvate Reductasehydroxypyruvic acidNADNADPPyruvatesRecombinant Proteins

Identifiers

PMID26865263
PMCPMC4749974
OpenAlexW2287669885

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.