Evidence map›Paper›PMID 26864288›Full record

ArticleBiomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals2015

Label-free proteomic analysis of the hydrophobic membrane protein complement in articular chondrocytes: a technique for identification of membrane biomarkers.

Csaba Matta, Xiaofei Zhang, Susan Liddell, Julia R Smith, Ali Mobasheri

Open access · bronzeAbstract read
In one paragraph

Article in Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  6. Biomarkers of (osteo)arthritis.Biomarkers : biochemical indicators of exposure, response, and susceptibility to chemicals · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 3 countries.

Csaba Mattaa Department of Veterinary Preclinical Sciences , School of Veterinary Medicine, Faculty of Health and Medical Sciences, University of Surrey , Guildford , Surrey , UK .
Xiaofei Zhangc Proteomics Laboratory, School of Biosciences, University of Nottingham , Sutton Bonington , UK .
Susan Liddellc Proteomics Laboratory, School of Biosciences, University of Nottingham , Sutton Bonington , UK .
Julia R Smithd Bruker UK Limited , Coventry , UK .
Ali Mobasheria Department of Veterinary Preclinical Sciences , School of Veterinary Medicine, Faculty of Health and Medical Sciences, University of Surrey , Guildford , Surrey , UK .
University of Nottingham · GBBruker (United Kingdom) · GBKing Abdulaziz University · SAUniversity of Debrecen · HU

Funding

Arthritis Research UK 20194
6 · The paper itself

Abstract

contextThere is insufficient knowledge about the chondrocyte membranome and its molecular composition.

objectiveTo develop a Triton X-114 based separation technique using nanoLC-MS/MS combined with shotgun proteomics to identify chondrocyte membrane proteins. MATERIALS AND

methodsArticular chondrocytes from equine metacarpophalangeal joints were separated into hydrophobic and hydrophilic fractions; trypsin-digested proteins were analysed by nanoLC-MS/MS.

resultsA total of 315 proteins were identified. The phase extraction method yielded a high proportion of membrane proteins (56%) including CD276, S100-A6 and three VDAC isoforms. DISCUSSION: Defining the chondrocyte membranome is likely to reveal new biomarker targets for conventional and biological drug discovery.

Indexed as

AnimalsB7 AntigensBiomarkersCartilage, ArticularCells, CulturedChondrocytesComputational BiologyDetergentsHorsesHydrophobic and Hydrophilic InteractionsLiquid-Liquid ExtractionMembrane ProteinsMetacarpophalangeal JointOctoxynolPolyethylene GlycolsProteomicsB7 AntigensBiomarkersDetergentsMembrane ProteinsNonidet P-40OctoxynolPolyethylene GlycolsS100 ProteinsVoltage-Dependent Anion ChannelsArticular cartilagechondrocyteequinemass spectrometrymembrane protein extractionmembranomeproteomicsTriton X-114

Identifiers

PMID26864288
PMCPMC4819840
OpenAlexW2282836319

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.