Evidence map›Paper›PMID 26863980›Full record

ArticleNature2016

Macromolecular diffractive imaging using imperfect crystals.

Kartik Ayyer, Oleksandr M Yefanov, Dominik Oberthür, Shatabdi Roy-Chowdhury, Lorenzo Galli, Valerio Mariani, Shibom Basu, Jesse Coe, Chelsie E Conrad, Raimund Fromme and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
16.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 140 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Real-space imaging of periodic nanotextures in thin films via phasing of diffraction data.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Processing macromolecular diffuse scattering data.bioRxiv : the preprint server for biology · 2023
    Article
  9. Ultrafast isolated molecule imaging without crystallization.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Nanocrystalline protein domains via salting-out.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  17. Macromolecular phasing using diffraction from multiple crystal forms.Acta crystallographica. Section A, Foundations and advances · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

34 authors at 7 institutions in 3 countries.

Kartik AyyerCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Oleksandr M YefanovCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Dominik OberthürDepartment of Physics, University of Hamburg, 22761 Hamburg, Germany.
Shatabdi Roy-ChowdhurySchool of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Lorenzo GalliCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Valerio MarianiCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Shibom BasuSchool of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Jesse CoeSchool of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Chelsie E ConradSchool of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Raimund FrommeSchool of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Alexander SchafferSchool of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Katerina DörnerCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Daniel JamesCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona 85287, USA.
Christopher KupitzSchool of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Markus MetzDepartment of Physics, University of Hamburg, 22761 Hamburg, Germany.
Garrett NelsonCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona 85287, USA.
Paulraj Lourdu XavierCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Kenneth R BeyerleinCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Marius SchmidtPhysics Department, University of Wisconsin, Milwaukee, Wisconsin 53211, USA.
Iosifina SarrouInstitute of Molecular Biology and Biotechnology, Foundation for Research and Technology, Hellas, GR-70013 Crete, Greece.
John C H SpenceCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona 85287, USA.
Uwe WeierstallCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona 85287, USA.
Thomas A WhiteCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Jay-How YangSchool of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Yun ZhaoCenter for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona 85287, USA.
Mengning LiangLinac Coherent Light Source, Stanford Linear Accelerator Center (SLAC), National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Andrew AquilaLinac Coherent Light Source, Stanford Linear Accelerator Center (SLAC), National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Mark S HunterLinac Coherent Light Source, Stanford Linear Accelerator Center (SLAC), National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Joseph S RobinsonLinac Coherent Light Source, Stanford Linear Accelerator Center (SLAC), National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Jason E KoglinLinac Coherent Light Source, Stanford Linear Accelerator Center (SLAC), National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Sébastien BoutetLinac Coherent Light Source, Stanford Linear Accelerator Center (SLAC), National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, USA.
Petra FrommeSchool of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA.
Anton BartyCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Henry N ChapmanCenter for Free-Electron Laser Science, DESY, 22607 Hamburg, Germany.
Arizona State University · USUniversität Hamburg · DESLAC National Accelerator Laboratory · USCenter for Free-Electron Laser Science · DELinac Coherent Light Source · USUniversity of Wisconsin–Milwaukee · USFoundation for Research and Technology Hellas · GR

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Center for the Rational Design of Membrane Protein CrystallographyU54GM094599 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2014
$6.8M
Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
Tracking conformational states in enzyme catalysts using correlated X-ray scatterR01GM097463 · NIGMS · STANFORD UNIVERSITY · PI DONIACH, SEBASTIAN · 2012 to 2015
$1.7M
NCRR NIH HHS P41 RR001209NCRR NIH HHS P41RR001209NIGMS NIH HHS P41 GM103393NIGMS NIH HHS P41GM103393NIGMS NIH HHS R01 GM095583NIGMS NIH HHS R01 GM097463NIGMS NIH HHS U54 GM094599
6 · The paper itself

Abstract

The three-dimensional structures of macromolecules and their complexes are mainly elucidated by X-ray protein crystallography. A major limitation of this method is access to high-quality crystals, which is necessary to ensure X-ray diffraction extends to sufficiently large scattering angles and hence yields information of sufficiently high resolution with which to solve the crystal structure. The observation that crystals with reduced unit-cell volumes and tighter macromolecular packing often produce higher-resolution Bragg peaks suggests that crystallographic resolution for some macromolecules may be limited not by their heterogeneity, but by a deviation of strict positional ordering of the crystalline lattice. Such displacements of molecules from the ideal lattice give rise to a continuous diffraction pattern that is equal to the incoherent sum of diffraction from rigid individual molecular complexes aligned along several discrete crystallographic orientations and that, consequently, contains more information than Bragg peaks alone. Although such continuous diffraction patterns have long been observed--and are of interest as a source of information about the dynamics of proteins--they have not been used for structure determination. Here we show for crystals of the integral membrane protein complex photosystem II that lattice disorder increases the information content and the resolution of the diffraction pattern well beyond the 4.5-ångström limit of measurable Bragg peaks, which allows us to phase the pattern directly. Using the molecular envelope conventionally determined at 4.5 ångströms as a constraint, we obtain a static image of the photosystem II dimer at a resolution of 3.5 ångströms. This result shows that continuous diffraction can be used to overcome what have long been supposed to be the resolution limits of macromolecular crystallography, using a method that exploits commonly encountered imperfect crystals and enables model-free phasing.

Indexed as

CrystallizationCrystallography, X-RayModels, MolecularPhotosystem II Protein ComplexPhotosystem II Protein Complex

Identifiers

PMID26863980
PMCPMC4839592
OpenAlexW2264985423

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.