Evidence map›Paper›PMID 26863195›Full record

ArticleNature2016

Polygenic evolution of a sugar specialization trade-off in yeast.

Jeremy I Roop, Kyu Chul Chang, Rachel B Brem

Open access · greenAbstract read
In one paragraph

Article in Nature, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
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  6. Review
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  8. Article
  9. Article
  10. The Plasma Membrane H+-ATPase Promoter Driving the Expression ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. GAL Regulon in the YeastFrontiers in molecular biosciences · 2022
    Article
  15. Review
  16. Article
  17. Article
  18. Lineage-specific selection and the evolution of virulence in theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jeremy I RoopDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California 94720, USA.
Kyu Chul ChangDepartment of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California 94720, USA.
Rachel B BremDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California 94720, USA.
Buck Institute for Research on Aging · USUniversity of California, Berkeley · US

Funding

Genetics of dark matter transcription in yeastR01GM087432 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BREM, RACHEL BETH · 2009 to 2013
$1.4M
NIGMS NIH HHS GM087432NIGMS NIH HHS R01 GM087432
6 · The paper itself

Abstract

The evolution of novel traits can involve many mutations scattered throughout the genome. Detecting and validating such a suite of alleles, particularly if they arose long ago, remains a key challenge in evolutionary genetics. Here we dissect an evolutionary trade-off of unprecedented genetic complexity between long-diverged species. When cultured in 1% glucose medium supplemented with galactose, Saccharomyces cerevisiae, but not S. bayanus or other Saccharomyces species, delayed commitment to galactose metabolism until glucose was exhausted. Promoters of seven galactose (GAL) metabolic genes from S. cerevisiae, when introduced together into S. bayanus, largely recapitulated the delay phenotype in 1% glucose-galactose medium, and most had partial effects when tested in isolation. Variation in GAL coding regions also contributed to the delay when tested individually in 1% glucose-galactose medium. When combined, S. cerevisiae GAL coding regions gave rise to profound growth defects in the S. bayanus background. In medium containing 2.5% glucose supplemented with galactose, wild-type S. cerevisiae repressed GAL gene expression and had a robust growth advantage relative to S. bayanus; transgenesis of S. cerevisiae GAL promoter alleles or GAL coding regions was sufficient for partial reconstruction of these phenotypes. S. cerevisiae GAL genes thus encode a regulatory program of slow induction and avid repression, and a fitness detriment during the glucose-galactose transition but a benefit when glucose is in excess. Together, these results make clear that genetic mapping of complex phenotypes is within reach, even in deeply diverged species.

Indexed as

Evolution, MolecularAllelesCarbohydrate MetabolismConserved SequenceCulture MediaGalactoseGene Expression Regulation, FungalGenes, FungalGenetic FitnessGenetic LociGlucoseMultifactorial InheritancePhenotypePhylogenyPromoter Regions, GeneticSaccharomycesCulture MediaGalactoseGlucose

Identifiers

PMID26863195
PMCPMC4760848
OpenAlexW2270687628

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.