Evidence map›Paper›PMID 26863024›Full record

ArticleJournal of the American Chemical Society2016

Ratiometric Imaging Using a Single Dye Enables Simultaneous Visualization of Rac1 and Cdc42 Activation.

Christopher J MacNevin, Alexei Toutchkine, Daniel J Marston, Chia-Wen Hsu, Denis Tsygankov, Li Li, Bei Liu, Timothy Qi, Dan-Vinh Nguyen, Klaus M Hahn

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
7.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

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  12. Mimicking transient activation of protein kinases in living cells.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  13. Spatiotemporal imaging of small GTPases activity in live cells.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Christopher J MacNevinDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
Alexei ToutchkineDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
Daniel J MarstonDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
Chia-Wen HsuDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
Denis TsygankovDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
Li LiDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
Bei LiuDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
Timothy QiDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
Dan-Vinh NguyenDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
Klaus M HahnDepartment of Pharmacology, The University of North Carolina at Chapel Hill , Chapel Hill, North Carolina 27599, United States.
University of North Carolina at Chapel Hill · US

Funding

INTERACTIVE GRAPHICS FOR MOLECULAR STUDIES &MICROSCOPYP41EB002025 · NIBIB · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SUPERFINE, RICHARD · 2003 to 2019
$16.9M
Spatio-temporal dynamics of GEF-GTPase networksP01GM103723 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAHN, KLAUS M. · 2013 to 2017
$5.5M
NIBIB NIH HHS P41 EB002025NIBIB NIH HHS P41-EB002025NIGMS NIH HHS P01 GM103723NIGMS NIH HHS P01-GM103723
6 · The paper itself

Abstract

Biosensors that report endogenous protein activity in vivo can be based on environment-sensing fluorescent dyes. The dyes can be attached to reagents that bind selectively to a specific conformation of the targeted protein, such that binding leads to a fluorescence change. Dyes that are sufficiently bright for use at low, nonperturbing intracellular concentrations typically undergo changes in intensity rather than the shifts in excitation or emission maxima that would enable precise quantitation through ratiometric imaging. We report here mero199, an environment-sensing dye that undergoes a 33 nm solvent-dependent shift in excitation. The dye was used to generate a ratiometric biosensor of Cdc42 (CRIB199) without the need for additional fluorophores. CRIB199 was used in the same cell with a FRET sensor of Rac1 activation to simultaneously observe Cdc42 and Rac1 activity in cellular protrusions, indicating that Rac1 but not Cdc42 activity was reduced during tail retraction, and specific protrusions had reduced Cdc42 activity. A novel program (EdgeProps) used to correlate localized activation with cell edge dynamics indicated that Rac1 was specifically reduced during retraction.

Indexed as

Biosensing Techniquescdc42 GTP-Binding ProteinFluorescence Resonance Energy TransferFluorescent DyesPhotobleachingPyridinium Compoundsrac1 GTP-Binding Proteincdc42 GTP-Binding ProteinFluorescent DyesPyridinium Compoundsrac1 GTP-Binding Protein

Identifiers

PMID26863024
PMCPMC4825053
OpenAlexW2285279890

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.