Evidence map›Paper›PMID 26862753›Full record

ArticlePLoS pathogens2016

Leader-Containing Uncapped Viral Transcript Activates RIG-I in Antiviral Stress Granules.

Seong-Wook Oh, Koji Onomoto, Mai Wakimoto, Kazuhide Onoguchi, Fumiyoshi Ishidate, Takahiro Fujiwara, Mitsutoshi Yoneyama, Hiroki Kato, Takashi Fujita

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 89 citations in OpenAlex.

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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Seong-Wook OhLaboratory of Molecular Genetics, Institute for Virus Research; 2. Laboratory of Molecular and Cellular Immunology, Graduate School of Biostudies, Kyoto University, Kyoto, Japan.
Koji OnomotoDivision of Molecular Immunology, Medical Mycology Research Center, Chiba University, Chiba, Japan.
Mai WakimotoLaboratory of Molecular Genetics, Institute for Virus Research, Kyoto University, Kyoto, Japan.
Kazuhide OnoguchiDepartment of Microbiology and Immunology, University of California, San Francisco, California, United States of America.
Fumiyoshi IshidateCarl Zeiss MicroImaging Co., Ltd., Tokyo, Japan.
Takahiro FujiwaraCenter for Meso-Bio Single-Molecule Imaging (CeMI), Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Kyoto, Japan.
Mitsutoshi YoneyamaDivision of Molecular Immunology, Medical Mycology Research Center, Chiba University, Chiba, Japan.
Hiroki KatoLaboratory of Molecular Genetics, Institute for Virus Research, Kyoto University, Kyoto, Japan.
Takashi FujitaLaboratory of Molecular Genetics, Institute for Virus Research, Kyoto University, Kyoto, Japan.
Kyoto University · JPChiba University · JPUniversity of California, San Francisco · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RIG-I triggers antiviral responses by recognizing viral RNA (vRNA) in the cytoplasm. However, the spatio-temporal dynamics of vRNA sensing and signal transduction remain elusive. We investigated the time course of events in cells infected with Newcastle disease virus (NDV), a non-segmented negative-strand RNA virus. RIG-I was recruited to viral replication complexes (vRC) and triggered minimal primary type I interferon (IFN) production. RIG-I subsequently localized to antiviral stress granules (avSG) induced after vRC formation. The inhibition of avSG attenuated secondary IFN production, suggesting avSG as a platform for efficient vRNA detection. avSG selectively captured positive-strand vRNA, and poly(A)+ RNA induced IFN production. Further investigations suggested that uncapped vRNA derived from read-through transcription was sensed by RIG-I in avSG. These results highlight how viral infections stimulate host stress responses, thereby selectively recruiting uncapped vRNA to avSG, in which RIG-I and other components cooperate in an efficient antiviral program.

Indexed as

AnimalsDEAD Box Protein 58DEAD-box RNA HelicasesHumansInfluenza A virusInterferon-betaInterferon Regulatory Factor-3Interferon Type IMiceNewcastle disease virusReceptors, ImmunologicRNA, ViralSignal TransductionStress, PhysiologicalDdx58 protein, mouseDEAD Box Protein 58DEAD-box RNA HelicasesInterferon-betaInterferon Regulatory Factor-3Interferon Type IReceptors, ImmunologicRIGI protein, humanRNA, Viral

Identifiers

PMID26862753
PMCPMC4749238
OpenAlexW2259288646

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.