Evidence map›Paper›PMID 26862588›Full record

ArticleData in brief2016

Data describing the effects of dietary bioactive agents on colonic stem cell microRNA and mRNA expression.

Manasvi S Shah, Eunjoo Kim, Laurie A Davidson, Jason M Knight, Roger S Zoh, Jennifer S Goldsby, Evelyn S Callaway, Beyian Zhou, Ivan Ivanov, Robert S Chapkin

Open access · goldAbstract read
In one paragraph

Article in Data in brief, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Manasvi S ShahProgram in Integrative Nutrition & Complex Diseases, United States; Intercollegiate Faculty of Genetics, United States; Divison of Endocrinology, Boston Children's Hospital, United States; Department of Pediatrics, Harvard Medical School, Boston, MA, United States.
Eunjoo KimProgram in Integrative Nutrition & Complex Diseases, United States; Department of Molecular and Cellular Medicine, United States.
Laurie A DavidsonProgram in Integrative Nutrition & Complex Diseases, United States.
Jason M KnightProgram in Integrative Nutrition & Complex Diseases, United States; Department of Electrical Engineering, United States; Center for Translational Environmental Health Research, Texas A&M University, College Station, TX, United States.
Roger S ZohProgram in Integrative Nutrition & Complex Diseases, United States; Department of Statistics, United States.
Jennifer S GoldsbyProgram in Integrative Nutrition & Complex Diseases, United States; Center for Translational Environmental Health Research, Texas A&M University, College Station, TX, United States.
Evelyn S CallawayProgram in Integrative Nutrition & Complex Diseases, United States.
Beyian ZhouDepartment of Veterinary Physiology & Pharmacology, United States; Center for Translational Environmental Health Research, Texas A&M University, College Station, TX, United States.
Ivan IvanovProgram in Integrative Nutrition & Complex Diseases, United States; Department of Veterinary Physiology & Pharmacology, United States; Center for Translational Environmental Health Research, Texas A&M University, College Station, TX, United States.
Robert S ChapkinProgram in Integrative Nutrition & Complex Diseases, United States; Intercollegiate Faculty of Genetics, United States; Center for Translational Environmental Health Research, Texas A&M University, College Station, TX, United States.
Texas A&M University · USBoston Children's Hospital · US

Funding

TARGETED GENOMICS FACILITY COREP30ES023512 · NIEHS · TEXAS A&M AGRILIFE RESEARCH · PI CHAPKIN, ROBERT STEPHEN · 2014 to 2017
$3.3M
Gene expression analysis of coding and non-coding RNAs in colon cancer preventionR01CA129444 · NCI · TEXAS A&M UNIVERSITY · PI CHAPKIN, ROBERT STEPHEN · 2007 to 2015
$2.1M
MicroRNA Regulated Macrophage Polarization in Adipose Tissue InflammationR01DK098662 · NIDDK · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI ZHOU, BEIYAN · 2013 to 2017
$1.6M
Chemoprotective effects of natural products on colonic adult stem cellsR01CA168312 · NCI · TEXAS A&M UNIVERSITY · PI CHAPKIN, ROBERT STEPHEN, PATIL, BHIMANAGOUDA S. · 2011 to 2015
$1.6M
Role of microRNAs in intestinal stem cell regulation and cancer initiationF32DK107108 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI SHAH, MANASVI S. · 2015 to 2017
$181k
NCI NIH HHS R01 CA129444NCI NIH HHS R01 CA168312NIDDK NIH HHS F32 DK107108NIDDK NIH HHS R01 DK098662NIEHS NIH HHS P30 ES023512
6 · The paper itself

Abstract

With the identification of Lgr5 as a definitive marker for intestinal stem cells, we used the highly novel, recently described, Lgr5-EGFP-IRES-cre ER (T2) knock in mouse model. Mice were injected with azoxymethane (AOM, a colon carcinogen) or saline (control) and fed a chemo-protective diet containing n-3 fatty acids and fermentable fiber (n-3 PUFA+pectin) or a control diet (n-6 PUFA + cellulose). Single cells were isolated from colonic mucosa crypts and three discrete populations of cells were collected via fluorescence activated cell sorting (FACS): Lgr5(high) (stem cells), Lgr5(low) (daughter cells) and Lgr5(negative) (differentiated cells). microRNA profiling and RNA sequencing were performed from the same sample and analyzed. These data refer to 'Comparative effects of diet and carcinogen on microRNA expression in the stem cell niche of the mouse colonic crypt' (Shah et al., 2016) [5].

Identifiers

PMID26862588
PMCPMC4707287
OpenAlexW2273487216

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.