Evidence map›Paper›PMID 26859882›Full record

ArticlePloS one2016

DNA Inversion Regulates Outer Membrane Vesicle Production in Bacteroides fragilis.

Haruyuki Nakayama-Imaohji, Katsuhiko Hirota, Hisashi Yamasaki, Saori Yoneda, Hirofumi Nariya, Motoo Suzuki, Thomas Secher, Yoichiro Miyake, Eric Oswald, Tetsuya Hayashi and 1 more

Abstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Lessons from the model gut BacteroidalesJournal of bacteriology · 2025
    Review
  3. Review
  4. Article
  5. Role of phase-variable Mfa1 fimbriae ofGut microbes reports · 2025
    Article
  6. Review
  7. Microbial Extracellular Vesicles in Host-Microbiota Interactions.Results and problems in cell differentiation · 2024
    Review
  8. Article
  9. Review
  10. Frontiers in immunology · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Shining Light on Human Gut Bacteriophages.Frontiers in cellular and infection microbiology · 2020
    Review
  16. Molecular Mechanisms ofJournal of bacteriology · 2019
    Article
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Haruyuki Nakayama-ImaohjiDepartment of Microbiology, Faculty of Medicine, Kagawa University, 1750-1 Miki, Kagawa 761-0793, Japan.
Katsuhiko HirotaDepartment of Oral Microbiology, Institute of Biomedical Sciences, Tokushima University Graduate School, Tokushima 770-8503, Japan.
Hisashi YamasakiDepartment of Cellular and Molecular Medicine, Wakayama Medical University Graduate School of Medicine, Wakayama 641-8509, Japan.
Saori YonedaDepartment of Microbiology, Faculty of Medicine, Kagawa University, 1750-1 Miki, Kagawa 761-0793, Japan.
Hirofumi NariyaDepartment of Microbiology, Faculty of Medicine, Kagawa University, 1750-1 Miki, Kagawa 761-0793, Japan.
Motoo SuzukiDepartment of Microbiology, Faculty of Medicine, Kagawa University, 1750-1 Miki, Kagawa 761-0793, Japan.
Thomas SecherInserm UMR1043 Toulouse, France.
Yoichiro MiyakeDepartment of Oral Microbiology, Institute of Biomedical Sciences, Tokushima University Graduate School, Tokushima 770-8503, Japan.
Eric OswaldInserm UMR1043 Toulouse, France.
Tetsuya HayashiDepartment of Bacteriology, Faculty of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.
Tomomi KuwaharaDepartment of Microbiology, Faculty of Medicine, Kagawa University, 1750-1 Miki, Kagawa 761-0793, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phase changes in Bacteroides fragilis, a member of the human colonic microbiota, mediate variations in a vast array of cell surface molecules, such as capsular polysaccharides and outer membrane proteins through DNA inversion. The results of the present study show that outer membrane vesicle (OMV) formation in this anaerobe is also controlled by DNA inversions at two distantly localized promoters, IVp-I and IVp-II that are associated with extracellular polysaccharide biosynthesis and the expression of outer membrane proteins. These promoter inversions are mediated by a single tyrosine recombinase encoded by BF2766 (orthologous to tsr19 in strain NCTC9343) in B. fragilis YCH46, which is located near IVp-I. A series of BF2766 mutants were constructed in which the two promoters were locked in different configurations (IVp-I/IVp-II = ON/ON, OFF/OFF, ON/OFF or OFF/ON). ON/ON B. fragilis mutants exhibited hypervesiculating, whereas the other mutants formed only a trace amount of OMVs. The hypervesiculating ON/ON mutants showed higher resistance to treatment with bile, LL-37, and human β-defensin 2. Incubation of wild-type cells with 5% bile increased the population of cells with the ON/ON genotype. These results indicate that B. fragilis regulates the formation of OMVs through DNA inversions at two distantly related promoter regions in response to membrane stress, although the mechanism underlying the interplay between the two regions controlled by the invertible promoters remains unknown.

Indexed as

Anti-Bacterial AgentsBacterial Outer Membrane ProteinsBacteroides fragilisCell MembraneDrug Resistance, BacterialExtracellular VesiclesGene Expression Regulation, BacterialPromoter Regions, GeneticProteomicsSequence InversionAnti-Bacterial AgentsBacterial Outer Membrane Proteins

Identifiers

PMID26859882
PMCPMC4747536

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.