Evidence map›Paper›PMID 26859870›Full record

ArticlePloS one2016

Transcriptomics Modeling of the Late-Gestation Fetal Pituitary Response to Transient Hypoxia.

Charles E Wood, Eileen I Chang, Elaine M Richards, Maria Belen Rabaglino, Maureen Keller-Wood

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Charles E WoodDepartment of Physiology and Functional Genomics, University of Florida College of Medicine, Gainesville, Florida 32610, United States of America.
Eileen I ChangDepartment of Physiology and Functional Genomics, University of Florida College of Medicine, Gainesville, Florida 32610, United States of America.
Elaine M RichardsDepartment of Pharmacodynamics, University of Florida College of Pharmacy, Gainesville, Florida 32610, United States of America.
Maria Belen RabaglinoDepartment of Physiology and Functional Genomics, University of Florida College of Medicine, Gainesville, Florida 32610, United States of America.
Maureen Keller-WoodDepartment of Pharmacodynamics, University of Florida College of Pharmacy, Gainesville, Florida 32610, United States of America.
University of Florida · USFlorida College · US

Funding

Using social networks to map and evaluate team science across CTSA hubsUL1TR001427 · NCATS · UNIVERSITY OF FLORIDA · PI MITCHELL, DUANE A. · 2015 to 2024
$37.2M
FETAL REFLEX RESPONSES TO CEREBRAL HYPOPERFUSIONR01HD033053 · NICHD · UNIVERSITY OF FLORIDA · PI WOOD, CHARLES E · 1996 to 2016
$4.1M
Renal Transporters and Fetal NeuroendocrinologyR01HD057561 · NICHD · UNIVERSITY OF FLORIDA · PI WOOD, CHARLES E · 2009 to 2013
$1.4M
Training in Endocrine, Metabolic, and Prenatal Basis of Chronic Kidney DiseaseT32DK076541 · NIDDK · UNIVERSITY OF FLORIDA · PI WOOD, CHARLES E · 2008 to 2012
$339k
NCATS NIH HHS UL1 TR001427NICHD NIH HHS HD033053NICHD NIH HHS HD057561NICHD NIH HHS R01 HD033053NICHD NIH HHS R01 HD057561NIDDK NIH HHS T32 DK076541NIDDK NIH HHS T32DK076541
6 · The paper itself

Abstract

backgroundThe late-gestation fetal sheep responds to hypoxia with physiological, neuroendocrine, and cellular responses that aid in fetal survival. The response of the fetus to hypoxia represents a coordinated effort to maximize oxygen transfer from the mother and minimize wasteful oxygen consumption by the fetus. While there have been many studies aimed at investigating the coordinated physiological and endocrine responses to hypoxia, and while immunohistochemical or in situ hybridization studies have revealed pathways supporting the endocrine function of the pituitary, there is little known about the coordinated cellular response of the pituitary to the hypoxia.

resultsThirty min hypoxia (from 17.0±1.7 to 8.0±0.8 mm Hg, followed by 30 min normoxia) upregulated 595 and downregulated 790 genes in fetal pituitary (123-132 days' gestation; term = 147 days). Network inference of up- and down- regulated genes revealed a high degree of functional relatedness amongst the gene sets. Gene ontology analysis revealed upregulation of cellular metabolic processes (e.g., RNA synthesis, response to estrogens) and downregulation of protein phosphorylation, protein metabolism, and mitosis. Genes found to be at the center of the network of upregulated genes included genes important for purine binding and signaling. At the center of the downregulated network were genes involved in mRNA processing, DNA repair, sumoylation, and vesicular trafficking. Transcription factor analysis revealed that both up- and down-regulated gene sets are enriched for control by several transcription factors (e.g., SP1, MAZ, LEF1, NRF1, ELK1, NFAT, E12, PAX4) but not for HIF-1, which is known to be an important controller of genomic responses to hypoxia.

conclusionsThe multiple analytical approaches used in this study suggests that the acute response to 30 min of transient hypoxia in the late-gestation fetus results in reduced cellular metabolism and a pattern of gene expression that is consistent with cellular oxygen and ATP starvation. In this early time point, we see a vigorous gene response. But, like the hypothalamus, the transcriptomic response is not consistent with mediation by HIF-1. If HIF-1 is a significant controller of gene expression in the fetal pituitary after hypoxia, it must be at a later time.

Indexed as

AnimalsFemaleFetal HypoxiaGene Regulatory NetworksGestational AgeMaleMaternal-Fetal ExchangeModels, GeneticOligonucleotide Array Sequence AnalysisPituitary GlandPregnancyReal-Time Polymerase Chain ReactionRNA, MessengerSheepTranscriptomeRNA, Messenger

Identifiers

PMID26859870
PMCPMC4747542
OpenAlexW2264488816

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.