Evidence map›Paper›PMID 26859667›Full record

ArticlePloS one2016

Plasmid Characterization and Chromosome Analysis of Two netF+ Clostridium perfringens Isolates Associated with Foal and Canine Necrotizing Enteritis.

Iman Mehdizadeh Gohari, Andrew M Kropinski, Scott J Weese, Valeria R Parreira, Ashley E Whitehead, Patrick Boerlin, John F Prescott

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Microorganisms · 2025
    Article
  3. Article
  4. First genomic analysis of aFrontiers in microbiology · 2025
    Article
  5. Genome sequences ofMicrobiology resource announcements · 2024
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Architecturally complexProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Protein Truncating Variants ofFrontiers in cellular and infection microbiology · 2021
    Article
  14. Comparative Genomics ofFrontiers in microbiology · 2021
    Article
  15. NetF-producingJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Review
  16. Article
  17. Pathogens (Basel, Switzerland) · 2019
    Article
  18. Article
  19. Review
  20. Intestinal lesions in dogs with acute hemorrhagic diarrhea syndrome associated with netF-positive Clostridium perfringens type A.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Iman Mehdizadeh GohariDepartment of Pathobiology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Andrew M KropinskiDepartment of Pathobiology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Scott J WeeseDepartment of Pathobiology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Valeria R ParreiraDepartment of Pathobiology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
Ashley E WhiteheadDepartment of Veterinary Clinical and Diagnostic Sciences, University of Calgary, Calgary, Alberta, CSB 101E, Canada.
Patrick BoerlinDepartment of Pathobiology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
John F PrescottDepartment of Pathobiology, University of Guelph, Guelph, Ontario N1G 2W1, Canada.
University of Guelph · CAUniversity of Calgary · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The recent discovery of a novel beta-pore-forming toxin, NetF, which is strongly associated with canine and foal necrotizing enteritis should improve our understanding of the role of type A Clostridium perfringens associated disease in these animals. The current study presents the complete genome sequence of two netF-positive strains, JFP55 and JFP838, which were recovered from cases of foal necrotizing enteritis and canine hemorrhagic gastroenteritis, respectively. Genome sequencing was done using Single Molecule, Real-Time (SMRT) technology-PacBio and Illumina Hiseq2000. The JFP55 and JFP838 genomes include a single 3.34 Mb and 3.53 Mb chromosome, respectively, and both genomes include five circular plasmids. Plasmid annotation revealed that three plasmids were shared by the two newly sequenced genomes, including a NetF/NetE toxins-encoding tcp-conjugative plasmid, a CPE/CPB2 toxins-encoding tcp-conjugative plasmid and a putative bacteriocin-encoding plasmid. The putative beta-pore-forming toxin genes, netF, netE and netG, were located in unique pathogenicity loci on tcp-conjugative plasmids. The C. perfringens JFP55 chromosome carries 2,825 protein-coding genes whereas the chromosome of JFP838 contains 3,014 protein-encoding genes. Comparison of these two chromosomes with three available reference C. perfringens chromosome sequences identified 48 (~247 kb) and 81 (~430 kb) regions unique to JFP55 and JFP838, respectively. Some of these divergent genomic regions in both chromosomes are phage- and plasmid-related segments. Sixteen of these unique chromosomal regions (~69 kb) were shared between the two isolates. Five of these shared regions formed a mosaic of plasmid-integrated segments, suggesting that these elements were acquired early in a clonal lineage of netF-positive C. perfringens strains. These results provide significant insight into the basis of canine and foal necrotizing enteritis and are the first to demonstrate that netF resides on a large and unique plasmid-encoded locus.

Indexed as

AnimalsBacterial ToxinsChromosomesClostridium InfectionsClostridium perfringensDogsEnteritisGenetic LociGenomicsHorsesPlasmidsSequence AnalysisSpecies SpecificityBacterial Toxins

Identifiers

PMID26859667
PMCPMC4747519
OpenAlexW2253224946

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.