Evidence map›Paper›PMID 26859352›Full record

ArticleDevelopmental cell2016

Ancient trans-Acting siRNAs Confer Robustness and Sensitivity onto the Auxin Response.

Yevgeniy Plavskin, Akitomo Nagashima, Pierre-François Perroud, Mitsuyasu Hasebe, Ralph S Quatrano, Gurinder S Atwal, Marja C P Timmermans

Abstract read
In one paragraph

Article in Developmental cell, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Mutational analyses of an instability domain reveal its conserved role in the regulation of class-B ARF levels inProceedings of the National Academy of Sciences of the United States of America · 2026
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  15. Auxin Biology in Bryophyta: A Simple Platform with Versatile Functions.Cold Spring Harbor perspectives in biology · 2021
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Yevgeniy PlavskinWatson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Akitomo NagashimaNational Institute for Basic Biology, Okazaki 444-8585, Japan; Exploratory Research for Advanced Technology, Japan Science and Technology Agency, Okazaki 444-8585, Japan.
Pierre-François PerroudDepartment of Biology, Washington University, St. Louis, MO 63130, USA.
Mitsuyasu HasebeNational Institute for Basic Biology, Okazaki 444-8585, Japan; Exploratory Research for Advanced Technology, Japan Science and Technology Agency, Okazaki 444-8585, Japan.
Ralph S QuatranoDepartment of Biology, Washington University, St. Louis, MO 63130, USA.
Gurinder S AtwalWatson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Marja C P TimmermansWatson School of Biological Sciences, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA; Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany. Electronic address: marja.timmermans@zmbp.uni-tuebingen.de.

Funding

CSHL Watson School of Biological SciencesT32GM065094 · NIGMS · COLD SPRING HARBOR LABORATORY · PI GANN, ALEXANDER · 2002 to 2021
$4.8M
NIGMS NIH HHS 5T32GM065094NIGMS NIH HHS T32 GM065094
6 · The paper itself

Abstract

Novel developmental programs often evolve via cooption of existing genetic networks. To understand this process, we explored cooption of the TAS3 tasiRNA pathway in the moss Physcomitrella patens. We find an ancestral function for this repeatedly redeployed pathway in the spatial regulation of a conserved set of Auxin Response Factors. In moss, this results in stochastic patterning of the filamentous protonemal tissue. Through modeling and experimentation, we demonstrate that tasiRNA regulation confers sensitivity and robustness onto the auxin response. Increased auxin sensitivity parallels increased developmental sensitivity to nitrogen, a key environmental signal. We propose that the properties lent to the auxin response network, along with the ability to stochastically modulate development in response to environmental cues, have contributed to repeated cooption of the tasiRNA-ARF module during evolution. The signaling properties of a genetic network, and not just its developmental output, are thus critical to understanding evolution of multicellular forms.

Indexed as

Gene Expression Regulation, PlantGene Regulatory NetworksIndoleacetic AcidsMicroRNAsPlant ProteinsRNA, PlantRNA, Small InterferingSignal TransductionIndoleacetic AcidsMicroRNAsPlant ProteinsRNA, PlantRNA, Small Interferingauxinevolutiongene regulatory networkPhyscomitrellasmall RNA

Identifiers

PMID26859352
PMCPMC5444541

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.