Evidence map›Paper›PMID 26858697›Full record

ArticleFrontiers in microbiology2016

Hydrogen Utilization Potential in Subsurface Sediments.

Rishi R Adhikari, Clemens Glombitza, Julia C Nickel, Chloe H Anderson, Ann G Dunlea, Arthur J Spivack, Richard W Murray, Steven D'Hondt, Jens Kallmeyer

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Rishi R AdhikariMARUM - Center for Marine Environmental Sciences, University of BremenBremen, Germany; Geomicrobiology Group, Institute of Earth and Environmental Science, University of PotsdamPotsdam, Germany.
Clemens GlombitzaCenter for Geomicrobiology, Department of Bioscience, Aarhus University Aarhus C, Denmark.
Julia C NickelGeomicrobiology Group, Institute of Earth and Environmental Science, University of PotsdamPotsdam, Germany; Helmholtz-Centre Potsdam - GFZ German Research Centre for GeosciencesPotsdam, Germany.
Chloe H AndersonDepartment of Earth and Environment, Boston University Boston, MA, USA.
Ann G DunleaDepartment of Earth and Environment, Boston University Boston, MA, USA.
Arthur J SpivackGraduate School of Oceanography, University of Rhode Island Kingston, RI, USA.
Richard W MurrayDepartment of Earth and Environment, Boston University Boston, MA, USA.
Steven D'HondtGraduate School of Oceanography, University of Rhode Island Kingston, RI, USA.
Jens KallmeyerGeomicrobiology Group, Institute of Earth and Environmental Science, University of PotsdamPotsdam, Germany; Helmholtz-Centre Potsdam - GFZ German Research Centre for GeosciencesPotsdam, Germany.
Boston University · USHelmholtz Centre Potsdam - GFZ German Research Centre for Geosciences · DEUniversity of Rhode Island · USAarhus University · DKUniversity of Bremen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Subsurface microbial communities undertake many terminal electron-accepting processes, often simultaneously. Using a tritium-based assay, we measured the potential hydrogen oxidation catalyzed by hydrogenase enzymes in several subsurface sedimentary environments (Lake Van, Barents Sea, Equatorial Pacific, and Gulf of Mexico) with different predominant electron-acceptors. Hydrogenases constitute a diverse family of enzymes expressed by microorganisms that utilize molecular hydrogen as a metabolic substrate, product, or intermediate. The assay reveals the potential for utilizing molecular hydrogen and allows qualitative detection of microbial activity irrespective of the predominant electron-accepting process. Because the method only requires samples frozen immediately after recovery, the assay can be used for identifying microbial activity in subsurface ecosystems without the need to preserve live material. We measured potential hydrogen oxidation rates in all samples from multiple depths at several sites that collectively span a wide range of environmental conditions and biogeochemical zones. Potential activity normalized to total cell abundance ranges over five orders of magnitude and varies, dependent upon the predominant terminal electron acceptor. Lowest per-cell potential rates characterize the zone of nitrate reduction and highest per-cell potential rates occur in the methanogenic zone. Possible reasons for this relationship to predominant electron acceptor include (i) increasing importance of fermentation in successively deeper biogeochemical zones and (ii) adaptation of H2ases to successively higher concentrations of H2 in successively deeper zones.

Indexed as

Barents Seadeep biosphereEquatorial PacificGulf of MexicohydrogenaseLake Vanmicrobial activitytritium assay

Identifiers

PMID26858697
PMCPMC4726784
OpenAlexW2260789794

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.