Evidence map›Paper›PMID 26858449›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

A glutamate/aspartate switch controls product specificity in a protein arginine methyltransferase.

Erik W Debler, Kanishk Jain, Rebeccah A Warmack, You Feng, Steven G Clarke, Günter Blobel, Pete Stavropoulos

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 52 citations in OpenAlex.

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  9. Protein arginine methylation in viral infection and antiviral immunity.International journal of biological sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Erik W DeblerLaboratory of Cell Biology, The Rockefeller University, New York, NY 10065; Howard Hughes Medical Institute, The Rockefeller University, New York, NY 10065; edebler@rockefeller.edu blobel@rockefeller.edu stavrop@rockefeller.edu.
Kanishk JainDepartment of Chemistry and Biochemistry and The Molecular Biology Institute, University of California, Los Angeles, CA 90095;
Rebeccah A WarmackDepartment of Chemistry and Biochemistry and The Molecular Biology Institute, University of California, Los Angeles, CA 90095;
You FengDepartment of Chemistry and Biochemistry and The Molecular Biology Institute, University of California, Los Angeles, CA 90095;
Steven G ClarkeDepartment of Chemistry and Biochemistry and The Molecular Biology Institute, University of California, Los Angeles, CA 90095;
Günter BlobelLaboratory of Cell Biology, The Rockefeller University, New York, NY 10065; Howard Hughes Medical Institute, The Rockefeller University, New York, NY 10065; edebler@rockefeller.edu blobel@rockefeller.edu stavrop@rockefeller.edu.
Pete StavropoulosLaboratory of Cell Biology, The Rockefeller University, New York, NY 10065; Howard Hughes Medical Institute, The Rockefeller University, New York, NY 10065; Laboratory of Lymphocyte Biology, The Rockefeller University, New York, NY 10065 edebler@rockefeller.edu blobel@rockefeller.edu stavrop@rockefeller.edu.
University of California, Los Angeles · USHoward Hughes Medical Institute · US

Funding

UCLA NIGMS T32 Program AssessmentT32GM007185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TORRES, JORGE · 1985 to 2020
$21.7M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
CONTROL OF EUCARYOTIC FUNCTION BY METHYLATIONR37GM026020 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CLARKE, STEVEN G · 2000 to 2009
$5.0M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
CONTROL OF EUKARYOTIC MEMBRANE FUNCTION BY METHYLATIONR01GM026020 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI CLARKE, STEVEN G · 1985 to 2013
$2.1M
Assessment of Tissue Response to StressR01EB000998 · NIBIB · UNIVERSITY OF WASHINGTON · PI SANDERS, JOAN E · 2003 to 2006
$1.1M
Howard Hughes Medical InstituteNIBIB NIH HHS P30-EB-00998NIBIB NIH HHS P30 EB009998NIBIB NIH HHS R01 EB000998NIGMS NIH HHS GM007185NIGMS NIH HHS GM026020NIGMS NIH HHS P41 GM103473NIGMS NIH HHS P41GM103473NIGMS NIH HHS R01 GM026020NIGMS NIH HHS R37 GM026020NIGMS NIH HHS T32 GM007185PHS HHS ACB-12002PHS HHS AGM-12006
6 · The paper itself

Abstract

Trypanosoma brucei PRMT7 (TbPRMT7) is a protein arginine methyltransferase (PRMT) that strictly monomethylates various substrates, thus classifying it as a type III PRMT. However, the molecular basis of its unique product specificity has remained elusive. Here, we present the structure of TbPRMT7 in complex with its cofactor product S-adenosyl-l-homocysteine (AdoHcy) at 2.8 Å resolution and identify a glutamate residue critical for its monomethylation behavior. TbPRMT7 comprises the conserved methyltransferase and β-barrel domains, an N-terminal extension, and a dimerization arm. The active site at the interface of the N-terminal extension, methyltransferase, and β-barrel domains is stabilized by the dimerization arm of the neighboring protomer, providing a structural basis for dimerization as a prerequisite for catalytic activity. Mutagenesis of active-site residues highlights the importance of Glu181, the second of the two invariant glutamate residues of the double E loop that coordinate the target arginine in substrate peptides/proteins and that increase its nucleophilicity. Strikingly, mutation of Glu181 to aspartate converts TbPRMT7 into a type I PRMT, producing asymmetric dimethylarginine (ADMA). Isothermal titration calorimetry (ITC) using a histone H4 peptide showed that the Glu181Asp mutant has markedly increased affinity for monomethylated peptide with respect to the WT, suggesting that the enlarged active site can favorably accommodate monomethylated peptide and provide sufficient space for ADMA formation. In conclusion, these findings yield valuable insights into the product specificity and the catalytic mechanism of protein arginine methyltransferases and have important implications for the rational (re)design of PRMTs.

Indexed as

Protein MultimerizationAspartic AcidCrystallography, X-RayGlutamic AcidProtein-Arginine N-MethyltransferasesProtein Structure, QuaternaryProtein Structure, TertiaryProtozoan ProteinsS-AdenosylhomocysteineSubstrate SpecificityTrypanosoma brucei bruceiAspartic AcidGlutamic AcidProtein-Arginine N-MethyltransferasesProtozoan ProteinsS-Adenosylhomocysteinecrystal structureenzyme catalysisepigeneticshistone methylationPRMT

Identifiers

PMID26858449
PMCPMC4776506
OpenAlexW2277458884

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.