Evidence map›Paper›PMID 26858406›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Structure of the Brd4 ET domain bound to a C-terminal motif from γ-retroviral integrases reveals a conserved mechanism of interaction.

Brandon L Crowe, Ross C Larue, Chunhua Yuan, Sonja Hess, Mamuka Kvaratskhelia, Mark P Foster

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 83 citations in OpenAlex.

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  8. An updated patent review of BRD4 degraders.Expert opinion on therapeutic patents · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Brandon L CroweDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210;
Ross C LarueCenter for Retrovirus Research and College of Pharmacy, The Ohio State University, Columbus, OH 43210;
Chunhua YuanCampus Chemical Instrument Center, The Ohio State University, Columbus, OH 43210;
Sonja HessProteome Exploration Laboratory, California Institute of Technology, Pasadena, CA 91125.
Mamuka KvaratskheliaCenter for Retrovirus Research and College of Pharmacy, The Ohio State University, Columbus, OH 43210;
Mark P FosterDepartment of Chemistry and Biochemistry, The Ohio State University, Columbus, OH 43210; foster.281@osu.edu.
The Ohio State University · USCalifornia Institute of Technology · US

Funding

Structure and function of HIV-1 integraseR01AI062520 · NIAID · UNIVERSITY OF COLORADO DENVER · PI KVARATSKHELIA, MAMUKA · 2006 to 2020
$5.3M
Cellular Cofactors of Murine Leukemia Virus IntegraseR21AI109522 · NIAID · OHIO STATE UNIVERSITY · PI KVARATSKHELIA, MAMUKA · 2014 to 2015
$423k
Brd4 interactions with host and viral proteins via the extra-terminal domainR21AI124463 · NIAID · OHIO STATE UNIVERSITY · PI FOSTER, MARK P. · 2016 to 2017
$415k
NIAID NIH HHS AI062520NIAID NIH HHS AI124463NIAID NIH HHS R01 AI062520NIAID NIH HHS R21 AI124463
6 · The paper itself

Abstract

The bromodomain and extraterminal domain (BET) protein family are promising therapeutic targets for a range of diseases linked to transcriptional activation, cancer, viral latency, and viral integration. Tandem bromodomains selectively tether BET proteins to chromatin by engaging cognate acetylated histone marks, and the extraterminal (ET) domain is the focal point for recruiting a range of cellular and viral proteins. BET proteins guide γ-retroviral integration to transcription start sites and enhancers through bimodal interaction with chromatin and the γ-retroviral integrase (IN). We report the NMR-derived solution structure of the Brd4 ET domain bound to a conserved peptide sequence from the C terminus of murine leukemia virus (MLV) IN. The complex reveals a protein-protein interaction governed by the binding-coupled folding of disordered regions in both interacting partners to form a well-structured intermolecular three-stranded β sheet. In addition, we show that a peptide comprising the ET binding motif (EBM) of MLV IN can disrupt the cognate interaction of Brd4 with NSD3, and that substitutions of Brd4 ET residues essential for binding MLV IN also impair interaction of Brd4 with a number of cellular partners involved in transcriptional regulation and chromatin remodeling. This suggests that γ-retroviruses have evolved the EBM to mimic a cognate interaction motif to achieve effective integration in host chromatin. Collectively, our findings identify key structural features of the ET domain of Brd4 that allow for interactions with both cellular and viral proteins.

Indexed as

Protein FoldingAmino Acid MotifsBromodomain Containing ProteinsCell Cycle ProteinsHumansIntegrasesLeukemia Virus, MurineNuclear ProteinsProtein BindingProtein Structure, TertiaryStructure-Activity RelationshipTranscription FactorsViral ProteinsBRD4 protein, humanBromodomain Containing ProteinsCell Cycle ProteinsIntegrasesNuclear ProteinsTranscription FactorsViral ProteinsBET family transcription factorET binding motif (EBM)NMRprotein–protein interactionretroviral integration

Identifiers

PMID26858406
PMCPMC4776507
OpenAlexW2281722953

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.