Evidence map›Paper›PMID 26858405›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Adaptive methylation regulation of p53 pathway in sympatric speciation of blind mole rats, Spalax.

Yang Zhao, Jia-Wei Tang, Zhi Yang, Yi-Bin Cao, Ji-Long Ren, Yuval Ben-Abu, Kexin Li, Xue-Qun Chen, Ji-Zeng Du, Eviatar Nevo

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 26 citations in OpenAlex.

  1. Variants ofLife science alliance · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. The Role ofCells · 2023
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Transcriptomes Divergence ofFrontiers in genetics · 2018
    Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Yang ZhaoDivision of Neurobiology and Physiology, Department of Basic Medical Sciences, School of Medicine, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Medical Neurobiology of the Ministry of Health, Hangzhou 310058, China; Key Laboratory of Neuroscience of Zhejiang Province, Hangzhou 310058, China; Institute of Evolution, University of Haifa, Haifa 3498838, Israel;
Jia-Wei TangDivision of Neurobiology and Physiology, Department of Basic Medical Sciences, School of Medicine, Zhejiang University, Hangzhou 310058, China;
Zhi YangDivision of Neurobiology and Physiology, Department of Basic Medical Sciences, School of Medicine, Zhejiang University, Hangzhou 310058, China;
Yi-Bin CaoDivision of Neurobiology and Physiology, Department of Basic Medical Sciences, School of Medicine, Zhejiang University, Hangzhou 310058, China; Division of Biochemistry and Molecular Biology, Department of Biotechnology, College of Chemistry and Life Science, Zhejiang Normal University, Jinhua 321004, China;
Ji-Long RenDivision of Neurobiology and Physiology, Department of Basic Medical Sciences, School of Medicine, Zhejiang University, Hangzhou 310058, China;
Yuval Ben-AbuProjects and Physics Section, Sapir Academic College, D.N. Hof Ashkelon 79165, Israel;
Kexin LiInstitute of Evolution, University of Haifa, Haifa 3498838, Israel; Institute of Apicultural Research, Chinese Academy of Agricultural Sciences,Beijing 100093, China.
Xue-Qun ChenDivision of Neurobiology and Physiology, Department of Basic Medical Sciences, School of Medicine, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Medical Neurobiology of the Ministry of Health, Hangzhou 310058, China; Key Laboratory of Neuroscience of Zhejiang Province, Hangzhou 310058, China; dujz@zju.edu.cn nevo@research.haifa.ac.il chewyg@zju.edu.cn.
Ji-Zeng DuDivision of Neurobiology and Physiology, Department of Basic Medical Sciences, School of Medicine, Zhejiang University, Hangzhou 310058, China; Key Laboratory of Medical Neurobiology of the Ministry of Health, Hangzhou 310058, China; Key Laboratory of Neuroscience of Zhejiang Province, Hangzhou 310058, China; dujz@zju.edu.cn nevo@research.haifa.ac.il chewyg@zju.edu.cn.
Eviatar NevoInstitute of Evolution, University of Haifa, Haifa 3498838, Israel; dujz@zju.edu.cn nevo@research.haifa.ac.il chewyg@zju.edu.cn.
Zhejiang Lab · CNZhejiang University · CNInstitute of Apiculture Research · CNSapir College · ILUniversity of Haifa · ILZhejiang Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic modifications play significant roles in adaptive evolution. The tumor suppressor p53, well known for controlling cell fate and maintaining genomic stability, is much less known as a master gene in environmental adaptation involving methylation modifications. The blind subterranean mole rat Spalax eherenbergi superspecies in Israel consists of four species that speciated peripatrically. Remarkably, the northern Galilee species Spalax galili (2n = 52) underwent adaptive ecological sympatric speciation, caused by the sharply divergent chalk and basalt ecologies. This was demonstrated by mitochondrial and nuclear genomic evidence. Here we show that the expression patterns of the p53 regulatory pathway diversified between the abutting sympatric populations of S. galili in sharply divergent chalk-basalt ecologies. We identified higher methylation on several sites of the p53 promoter in the population living in chalk soil (chalk population). Site mutagenesis showed that methylation on these sites linked to the transcriptional repression of p53 involving Cut-Like Homeobox 1 (Cux1), paired box 4 (Pax 4), Pax 6, and activator protein 1 (AP-1). Diverse expression levels of p53 between the incipiently sympatrically speciating chalk-basalt abutting populations of S. galili selectively affected cell-cycle arrest but not apoptosis. We hypothesize that methylation modification of p53 has adaptively shifted in supervising its target genes during sympatric speciation of S. galili to cope with the contrasting environmental stresses of the abutting divergent chalk-basalt ecologies.

Indexed as

DNA MethylationGenes, p53Adaptation, BiologicalAnimalsCalcium CarbonateCell Cycle CheckpointsEcosystemEvolution, MolecularGene ExpressionGenetic SpeciationGenetics, PopulationLungPromoter Regions, GeneticSilicatesSoilSpalaxbasaltCalcium CarbonateSilicatesSoilecological stress and adaptationepigeneticsevolutionspeciation

Identifiers

PMID26858405
PMCPMC4776458
OpenAlexW2259550069

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.