Evidence map›Paper›PMID 26858078›Full record

ArticleScientific reports2016

Limited Antigenic Diversity in Contemporary H7 Avian-Origin Influenza A Viruses from North America.

Yifei Xu, Elizabeth Bailey, Erica Spackman, Tao Li, Hui Wang, Li-Ping Long, John A Baroch, Fred L Cunningham, Xiaoxu Lin, Richard G Jarman and 2 more

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Antigenic characterization of influenza and SARS-CoV-2 viruses.Analytical and bioanalytical chemistry · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yifei XuDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, the United States.
Elizabeth BaileyDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, the United States.
Erica SpackmanExotic and Emerging Avian Viral Diseases Unit, Southeast Poultry Research Laboratory, US National Poultry Research Center, US Department of Agriculture, Agricultural Research Service, Athens, Georgia, the United States.
Tao LiViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, Maryland, the United States.
Hui WangDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, the United States.
Li-Ping LongDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, the United States.
John A BarochNational Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection Service, US Department of Agriculture, Fort Collins, Colorado, the United States.
Fred L CunninghamMississippi Field Station, National Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection Service, US Department of Agriculture, Mississippi State, Mississippi, the United States.
Xiaoxu LinViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, Maryland, the United States.
Richard G JarmanViral Diseases Branch, Walter Reed Army Institute of Research, Silver Spring, Maryland, the United States.
Thomas J DeLibertoNational Wildlife Research Center, Wildlife Services, Animal and Plant Health Inspection Service, US Department of Agriculture, Fort Collins, Colorado, the United States.
Xiu-Feng WanDepartment of Basic Sciences, College of Veterinary Medicine, Mississippi State University, Mississippi State, Mississippi, the United States.

Funding

Training and Mentoring Core P20GM103476 · NIGMS · UNIVERSITY OF SOUTHERN MISSISSIPPI · PI MICHAEL R GARRETT · 2012 to 2026
$60.2M
Genome Based Influenza Vaccine Strain Selection using Machine LearningR01AI116744 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI WAN, XIUFENG HENRY · 2015 to 2019
$1.9M
NIAID NIH HHS R01 AI116744NIGMS NIH HHS P20 GM103476
6 · The paper itself

Abstract

Subtype H7 avian-origin influenza A viruses (AIVs) have caused at least 500 confirmed human infections since 2003 and culling of >75 million birds in recent years. Here we antigenically and genetically characterized 93 AIV isolates from North America (85 from migratory waterfowl [1976-2010], 7 from domestic poultry [1971-2012], and 1 from a seal [1980]). The hemagglutinin gene of these H7 viruses are separated from those from Eurasia. Gradual accumulation of nucleotide and amino acid substitutions was observed in the hemagglutinin of H7 AIVs from waterfowl and domestic poultry. Genotype characterization suggested that H7 AIVs in wild birds form diverse and transient internal gene constellations. Serologic analyses showed that the 93 isolates cross-reacted with each other to different extents. Antigenic cartography showed that the average antigenic distance among them was 1.14 units (standard deviation [SD], 0.57 unit) and that antigenic diversity among the H7 isolates we tested was limited. Our results suggest that the continuous genetic evolution has not led to significant antigenic diversity for H7 AIVs from North America. These findings add to our understanding of the natural history of IAVs and will inform public health decision-making regarding the threat these viruses pose to humans and poultry.

Indexed as

Antigenic VariationAntigens, ViralHemagglutinin Glycoproteins, Influenza VirusInfluenza A Virus, H7N3 SubtypeInfluenza in BirdsAnimalsChick EmbryoChickensHumansNorth AmericaAntigens, ViralHemagglutinin Glycoproteins, Influenza Virus

Identifiers

PMID26858078
PMCPMC4746648

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.