ArticleScientific reports2016
Comparative genomic and functional analysis reveal conservation of plant growth promoting traits in Paenibacillus polymyxa and its closely related species.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.
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85 citing papers in PubMed.
- Whole-genome and Comparative Genomic Analysis Reveal the Biocontrol and Plant Growth-Promoting Potential of Bacillus velezensis JN.Y2 Against Oat Anthracnose.Functional & integrative genomics · 2026Article
- Integrated functional genomics and safety assessment of plant-growth-promoting Caryophanales from post-maize-cultivation soils.BMC genomics · 2026Article
- Enhancement of Sweet Corn Seed Quality and Early Seedling Vigor byMicroorganisms · 2026Article
- Integrative Exploration ofInternational journal of molecular sciences · 2026Article
- Whole-genome sequence and functional insights into the salt-tolerant plant growth-promoting bacterium Priestia aryabhattai MS3.BMC genomics · 2026Article
- Comparative genomic analyses reveal key traits for biocontrol and the promotion of plant growth in Paenibacillus strains.World journal of microbiology & biotechnology · 2026Article
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- Characterization of toxin systems of Paenibacillus strains isolated from honeybees.Scientific reports · 2025Article
- Conservation of sporulation genes and a transmembrane-containing Spo0B variant inbioRxiv : the preprint server for biology · 2025Article
- Regulation of the Ald gene encoding alanine dehydrogenase and its induction of ammonium-tolerant nitrogen fixation in Paenibacillus polymyxa WLY78.Microbial cell factories · 2025Article
- Vip3C proteins fromApplied and environmental microbiology · 2025Article
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- Novel gut bacteria species Paenibacillus ilasis with phosphorus degrading and soluble starch hydrolysis abilities isolated from fresh feces of rhinoceros.Scientific reports · 2025Article
- Genomic and phenotypic insights into Serratia interaction with plants from an ecological perspective.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025Article
- Genetic Diversity of Endospore-forming Nitrogen-fixing Bacteria and Their Future Application as Biofertilizers in the Central Dry Zone of Myanmar.Microbes and environments · 2025Article
- Study on the isolation of rhizosphere bacteria and the mechanism of growth promotion in winter wheat in response to drought stress.Frontiers in plant science · 2025Article
- Description of Cohnella rhizoplanae sp. nov., isolated from the root surface of soybean (Glycine max).Antonie van Leeuwenhoek · 2024Article
- Friends and Foes: Bacteria of the Hydroponic Plant Microbiome.Plants (Basel, Switzerland) · 2024Review
- Genomic diversity in Paenibacillus polymyxa: unveiling distinct species groups and functional variability.BMC genomics · 2024Article
- Review
25 more citing papers are in PubMed but not listed here.
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6 authors.
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Abstract
Paenibacillus polymyxa has widely been studied as a model of plant-growth promoting rhizobacteria (PGPR). Here, the genome sequences of 9 P. polymyxa strains, together with 26 other sequenced Paenibacillus spp., were comparatively studied. Phylogenetic analysis of the concatenated 244 single-copy core genes suggests that the 9 P. polymyxa strains and 5 other Paenibacillus spp., isolated from diverse geographic regions and ecological niches, formed a closely related clade (here it is called Poly-clade). Analysis of single nucleotide polymorphisms (SNPs) reveals local diversification of the 14 Poly-clade genomes. SNPs were not evenly distributed throughout the 14 genomes and the regions with high SNP density contain the genes related to secondary metabolism, including genes coding for polyketide. Recombination played an important role in the genetic diversity of this clade, although the rate of recombination was clearly lower than mutation. Some genes relevant to plant-growth promoting traits, i.e. phosphate solubilization and IAA production, are well conserved, while some genes relevant to nitrogen fixation and antibiotics synthesis are evolved with diversity in this Poly-clade. This study reveals that both P. polymyxa and its closely related species have plant growth promoting traits and they have great potential uses in agriculture and horticulture as PGPR.
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