Evidence map›Paper›PMID 26854734›Full record

ArticleBiochimica et biophysica acta2016

Effects of alanine:glyoxylate aminotransferase variants and pyridoxine sensitivity on oxalate metabolism in a cell-based cytotoxicity assay.

Sonia Fargue, John Knight, Ross P Holmes, Gill Rumsby, Christopher J Danpure

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Infant primary hyperoxaluria type 1Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2024
    Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Recovery From Dialysis in Patients With Primary Hyperoxaluria Type 1 Treated With Pyridoxine: A Report of 3 Cases.American journal of kidney diseases : the official journal of the National Kidney Foundation · 2021
    Article
  11. Effect of alanine supplementation on oxalate synthesis.Biochimica et biophysica acta. Molecular basis of disease · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Molecular therapy of primary hyperoxaluria.Journal of inherited metabolic disease · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Sonia FargueDepartment of Cell & Developmental Biology, University College London, London WC1E 6BT, UK; Department of Urology, University of Alabama at Birmingham, Birmingham, AL 35294, USA. Electronic address: sfargue@uab.edu.
John KnightDepartment of Urology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Ross P HolmesDepartment of Urology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Gill RumsbyDepartment of Clinical Biochemistry, University College London Hospitals, London W1T 4EU, UK.
Christopher J DanpureDepartment of Cell & Developmental Biology, University College London, London WC1E 6BT, UK.
University of Alabama at Birmingham · USUniversity College Hospital · GBUniversity College London · GB

Funding

Mitochondrial Metabolism in Primary HyperoxaluriaR01DK054468 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI HOLMES, ROSS P · 1999 to 2017
$4.1M
NIDDK NIH HHS R01 DK054468
6 · The paper itself

Abstract

The hereditary kidney stone disease primary hyperoxaluria type 1 (PH1) is caused by a functional deficiency of the liver-specific, peroxisomal, pyridoxal-phosphate-dependent enzyme, alanine:glyoxylate aminotransferase (AGT). One third of PH1 patients, particularly those expressing the p.[(Pro11Leu; Gly170Arg; Ile340Met)] mutant allele, respond clinically to pharmacological doses of pyridoxine. To gain further insight into the metabolic effects of AGT dysfunction in PH1 and the effect of pyridoxine, we established an "indirect" glycolate cytotoxicity assay using CHO cells expressing glycolate oxidase (GO) and various normal and mutant forms of AGT. In cells expressing GO the great majority of glycolate was converted to oxalate and glyoxylate, with the latter causing the greater decrease in cell survival. Co-expression of normal AGTs and some, but not all, mutant AGT variants partially counteracted this cytotoxicity and led to decreased synthesis of oxalate and glyoxylate. Increasing the extracellular pyridoxine up to 0.3μM led to an increased metabolic effectiveness of normal AGTs and the AGT-Gly170Arg variant. The increased survival seen with AGT-Gly170Arg was paralleled by a 40% decrease in oxalate and glyoxylate levels. These data support the suggestion that the effectiveness of pharmacological doses of pyridoxine results from an improved metabolic effectiveness of AGT; that is the increased rate of transamination of glyoxylate to glycine. The indirect glycolate toxicity assay used in the present study has potential to be used in cell-based drug screening protocols to identify chemotherapeutics that might enhance or decrease the activity and metabolic effectiveness of AGT and GO, respectively, and be useful in the treatment of PH1.

Indexed as

AnimalsCell SurvivalCHO CellsCricetulusGlycolatesHumansHyperoxaluria, PrimaryMutationOxalatesPyridoxineReactive Oxygen SpeciesTransaminasesAlanine-glyoxylate transaminaseGlycolatesglycolic acidOxalatesPyridoxineReactive Oxygen SpeciesTransaminasesAlanine:glyoxylate aminotransferaseGlyoxylateKidney stonesOxalatePrimary hyperoxaluriaPyridoxine

Identifiers

PMID26854734
PMCPMC5110007
OpenAlexW2261766689

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.