Evidence map›Paper›PMID 26854667›Full record

ArticleNature chemical biology2016

A proactive role of water molecules in acceptor recognition by protein O-fucosyltransferase 2.

Jessika Valero-González, Christina Leonhard-Melief, Erandi Lira-Navarrete, Gonzalo Jiménez-Osés, Cristina Hernández-Ruiz, María Carmen Pallarés, Inmaculada Yruela, Deepika Vasudevan, Anabel Lostao, Francisco Corzana and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
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  6. Review
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  8. ProteinMolecules (Basel, Switzerland) · 2025
    Review
  9. Article
  10. Article
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  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. O-fucosylation of thrombospondin type 1 repeats is essential for ECM remodeling and signaling during bone development.Matrix biology : journal of the International Society for Matrix Biology · 2022
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Jessika Valero-GonzálezInstitute for Biocomputation and Physics of Complex Systems (BIFI), University of Zaragoza, BIFI-IQFR (CSIC) Joint Unit, Mariano Esquillor s/n, Campus Rio Ebro, Zaragoza, Spain.
Christina Leonhard-MeliefDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.
Erandi Lira-NavarreteInstitute for Biocomputation and Physics of Complex Systems (BIFI), University of Zaragoza, BIFI-IQFR (CSIC) Joint Unit, Mariano Esquillor s/n, Campus Rio Ebro, Zaragoza, Spain.
Gonzalo Jiménez-OsésInstitute for Biocomputation and Physics of Complex Systems (BIFI), University of Zaragoza, BIFI-IQFR (CSIC) Joint Unit, Mariano Esquillor s/n, Campus Rio Ebro, Zaragoza, Spain.ORCID http://orcid.org/0000-0003-0105-4337
Cristina Hernández-RuizInstitute for Biocomputation and Physics of Complex Systems (BIFI), University of Zaragoza, BIFI-IQFR (CSIC) Joint Unit, Mariano Esquillor s/n, Campus Rio Ebro, Zaragoza, Spain.
María Carmen PallarésLaboratorio de Microscopias Avanzadas, Instituto de Nanociencia de Aragón, Universidad de Zaragoza, Zaragoza, Spain.
Inmaculada YruelaEstación Experimental de Aula Dei (EEAD-CSIC), Zaragoza, Spain.ORCID http://orcid.org/0000-0003-3608-4720
Deepika VasudevanDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.
Anabel LostaoLaboratorio de Microscopias Avanzadas, Instituto de Nanociencia de Aragón, Universidad de Zaragoza, Zaragoza, Spain.ORCID http://orcid.org/0000-0001-7460-5916
Francisco CorzanaDepartamento de Química, Universidad de La Rioja, Centro de Investigación en Síntesis Química, Logroño, Spain.ORCID http://orcid.org/0000-0001-5597-8127
Hideyuki TakeuchiDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.
Robert S HaltiwangerDepartment of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York, USA.
Ramon Hurtado-GuerreroInstitute for Biocomputation and Physics of Complex Systems (BIFI), University of Zaragoza, BIFI-IQFR (CSIC) Joint Unit, Mariano Esquillor s/n, Campus Rio Ebro, Zaragoza, Spain.
Universidad de Zaragoza · ESStony Brook University · USEstación Experimental de Aula Dei · ESUniversidad de La Rioja · ESUniversity of California, Los Angeles · US

Funding

O-Glycosylation of Epidermal Growth Factor-like MotifsR01GM061126 · NIGMS · UNIVERSITY OF GEORGIA · PI HALTIWANGER, ROBERT S. · 2001 to 2021
$9.1M
Glycosylation of Thrombospondin Type 1 RepeatsR01CA123071 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI HALTIWANGER, ROBERT S. · 2007 to 2011
$1.7M
NCI NIH HHS CA123071NCI NIH HHS R01 CA123071NIGMS NIH HHS GM061126NIGMS NIH HHS R01 GM061126
6 · The paper itself

Abstract

Protein O-fucosyltransferase 2 (POFUT2) is an essential enzyme that fucosylates serine and threonine residues of folded thrombospondin type 1 repeats (TSRs). To date, the mechanism by which this enzyme recognizes very dissimilar TSRs has been unclear. By engineering a fusion protein, we report the crystal structure of Caenorhabditis elegans POFUT2 (CePOFUT2) in complex with GDP and human TSR1 that suggests an inverting mechanism for fucose transfer assisted by a catalytic base and shows that nearly half of the TSR1 is embraced by CePOFUT2. A small number of direct interactions and a large network of water molecules maintain the complex. Site-directed mutagenesis demonstrates that POFUT2 fucosylates threonine preferentially over serine and relies on folded TSRs containing the minimal consensus sequence C-X-X-S/T-C. Crystallographic and mutagenesis data, together with atomic-level simulations, uncover a binding mechanism by which POFUT2 promiscuously recognizes the structural fingerprint of poorly homologous TSRs through a dynamic network of water-mediated interactions.

Indexed as

Base SequenceCaenorhabditis elegans ProteinsCloning, MolecularCrystallography, X-RayFucosyltransferasesHEK293 CellsHumansMolecular Dynamics SimulationMolecular Sequence DataMutagenesis, Site-DirectedProtein FoldingProtein Structure, SecondaryRecombinant Fusion ProteinsThrombospondin 1TransfectionWaterCaenorhabditis elegans ProteinsFucosyltransferasesprotein O-fucosyltransferase 2, C elegansRecombinant Fusion ProteinsThrombospondin 1Water

Identifiers

PMID26854667
PMCPMC4845761
OpenAlexW2260187185

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.