Evidence map›Paper›PMID 26854089›Full record

ArticleAmerican journal of medical genetics. Part A2016

Clinically relevant variants identified in thoracic aortic aneurysm patients by research exome sequencing.

Jeffrey A Schubert, Benjamin J Landis, Amy R Shikany, Robert B Hinton, Stephanie M Ware

Open access · greenAbstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. A Novel RecurrentArteriosclerosis, thrombosis, and vascular biology · 2020
    Article
  9. Article
  10. Human aortic aneurysm genomic dictionary: is it possible?Indian journal of thoracic and cardiovascular surgery · 2019
    Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Jeffrey A SchubertDepartment of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Benjamin J LandisDepartment of Pediatrics and Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana.
Amy R ShikanyDivision of Cardiology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Robert B HintonDivision of Cardiology, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Stephanie M WareDepartment of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati College of Medicine, Cincinnati, Ohio.
Cincinnati Children's Hospital Medical Center · USIndiana University – Purdue University Indianapolis · USIndiana University School of MedicineUniversity of Cincinnati Medical Center · US

Funding

Indiana Pediatric Scientist Award(IPSA)K12HD068371 · NICHD · INDIANA UNIVERSITY INDIANAPOLIS · PI CLAPP, DAVID W · 2013 to 2017
$1.9M
NICHD NIH HHS K12 HD068371
6 · The paper itself

Abstract

Thoracic aortic aneurysm (TAA) is a genetically heterogeneous disease involving subclinical and progressive dilation of the thoracic aorta, which can lead to life-threatening complications such as dissection or rupture. Genetic testing is important for risk stratification and identification of at risk family members, and clinically available genetic testing panels have been expanding rapidly. However, when past testing results are normal, there is little evidence to guide decision-making about the indications and timing to pursue additional clinical genetic testing. Results from research based genetic testing can help inform this process. Here we present 10 TAA patients who have a family history of disease and who enrolled in research-based exome testing. Nine of these ten patients had previous clinical genetic testing that did not identify the cause of disease. We sought to determine the number of rare variants in 23 known TAA associated genes identified by research-based exome testing. In total, we found 10 rare variants in six patients. Likely pathogenic variants included a TGFB2 variant in one patient and a SMAD3 variant in another. These variants have been reported previously in individuals with similar phenotypes. Variants of uncertain significance of particular interest included novel variants in MYLK and MFAP5, which were identified in a third patient. In total, clinically reportable rare variants were found in 6/10 (60%) patients, with at least 2/10 (20%) patients having likely pathogenic variants identified. These data indicate that consideration of re-testing is important in TAA patients with previous negative or inconclusive results.

Indexed as

AdolescentAdultAgedAortic Aneurysm, ThoracicCalcium-Binding ProteinsChildContractile ProteinsExomeFemaleGenetic TestingGlycoproteinsHigh-Throughput Nucleotide SequencingHumansIntercellular Signaling Peptides and ProteinsLoeys-Dietz SyndromeMaleCalcium-Binding ProteinsContractile ProteinsGlycoproteinsIntercellular Signaling Peptides and ProteinsMFAP5 protein, humanMYLK protein, humanMyosin-Light-Chain KinaseSmad3 ProteinSMAD3 protein, humanTGFB2 protein, humanTransforming Growth Factor beta2clinical genetic testingLoeys-Dietz syndromeMarfan syndromeMFAP5MYLKnext generation sequencingSMAD3TGFB2

Identifiers

PMID26854089
PMCPMC5125072
OpenAlexW2336233646

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.