Evidence map›Paper›PMID 26853830›Full record

ArticleScientific reports2016

Noise Reduction in Complex Biological Switches.

Luca Cardelli, Attila Csikász-Nagy, Neil Dalchau, Mirco Tribastone, Max Tschaikowski

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Limits of noise for autoregulated gene expression.Journal of mathematical biology · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Efficient Switches in Biology and Computer Science.PLoS computational biology · 2017
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Luca CardelliMicrosoft Research, 21 Station Road, CB1 2FB, Cambridge, United Kingdom.
Attila Csikász-NagyRandall Division of Cell and Molecular Biophysics, Institute for Mathematical and Molecular Biomedicine, King's College London, WC2R 2LS, London, United Kingdom.
Neil DalchauMicrosoft Research, 21 Station Road, CB1 2FB, Cambridge, United Kingdom.
Mirco TribastoneIMT Institute for Advanced Studies, Piazza S. Francesco 19, 55100 Lucca, Italy.
Max TschaikowskiIMT Institute for Advanced Studies, Piazza S. Francesco 19, 55100 Lucca, Italy.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cells operate in noisy molecular environments via complex regulatory networks. It is possible to understand how molecular counts are related to noise in specific networks, but it is not generally clear how noise relates to network complexity, because different levels of complexity also imply different overall number of molecules. For a fixed function, does increased network complexity reduce noise, beyond the mere increase of overall molecular counts? If so, complexity could provide an advantage counteracting the costs involved in maintaining larger networks. For that purpose, we investigate how noise affects multistable systems, where a small amount of noise could lead to very different outcomes; thus we turn to biochemical switches. Our method for comparing networks of different structure and complexity is to place them in conditions where they produce exactly the same deterministic function. We are then in a good position to compare their noise characteristics relatively to their identical deterministic traces. We show that more complex networks are better at coping with both intrinsic and extrinsic noise. Intrinsic noise tends to decrease with complexity, and extrinsic noise tends to have less impact. Our findings suggest a new role for increased complexity in biological networks, at parity of function.

Indexed as

Models, BiologicalAlgorithmsCell Cycle CheckpointsNoise

Identifiers

PMID26853830
PMCPMC4745012

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.