Evidence map›Paper›PMID 26853494›Full record

ArticleCancer biology & therapy2016

Genome-wide analysis of abdominal and pleural malignant mesothelioma with DNA arrays reveals both common and distinct regions of copy number alteration.

Alain C Borczuk, Jianming Pei, Robert N Taub, Brynn Levy, Odelia Nahum, Jinli Chen, Katherine Chen, Joseph R Testa

Open access · bronzeAbstract read
In one paragraph

Article in Cancer biology & therapy, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
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  5. Review
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  9. Review
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  11. Article
  12. New insights in the pathology of peritoneal surface malignancy.Journal of gastrointestinal oncology · 2021
    Review
  13. Malignant pleural mesothelioma: an update.Jornal brasileiro de pneumologia : publicacao oficial da Sociedade Brasileira de Pneumologia e Tisilogia · 2021
    Review
  14. Molecular characterization of diffuse malignant peritoneal mesothelioma.Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2020
    Article
  15. Review
  16. Genomics and Functional Genomics of Malignant Pleural Mesothelioma.International journal of molecular sciences · 2020
    Review
  17. Article
  18. Article
  19. Article
  20. Genomic Deletion ofInternational journal of molecular sciences · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Alain C Borczuka Department of Pathology and Medicine , Weill Cornell Medicine , New York , USA.
Jianming Peib Cancer Biology Program and Genomics Facility, Fox Chase Cancer Center , Philadelphia , USA.
Robert N Taubc Department of Medicine , Division of Hematology and Oncology.
Brynn Levyd Department of Pathology and Cell Biology , Columbia University Medical Center , New York , USA.
Odelia Nahumd Department of Pathology and Cell Biology , Columbia University Medical Center , New York , USA.
Jinli Chend Department of Pathology and Cell Biology , Columbia University Medical Center , New York , USA.
Katherine Chena Department of Pathology and Medicine , Weill Cornell Medicine , New York , USA.
Joseph R Testab Cancer Biology Program and Genomics Facility, Fox Chase Cancer Center , Philadelphia , USA.
Columbia University Irving Medical Center · USCornell University · USFox Chase Cancer Center · US

Funding

WORD PROCESSING CENTER--COREP30CA006927 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI Margaret von Mehren · 1985 to 2026
$138.8M
Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI Rebecca A Simmons · 2006 to 2026
$35.3M
The Role of p21-Activated Kinases in Malignant MesotheliomaR01CA148805 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI CHERNOFF, JONATHAN, TESTA, JOSEPH R. · 2011 to 2020
$4.0M
Pathogenesis of Malignant Mesothelioma by the Human Polycomb Complex BAP1-ASXLR01CA175691 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI RAUSCHER III, FRANK JOSEPH, TESTA, JOSEPH R. · 2014 to 2018
$2.7M
NCI NIH HHS CA-06927NCI NIH HHS CA-175691NCI NIH HHS P30 CA006927NCI NIH HHS R01 CA148805NCI NIH HHS R01 CA175691NIEHS NIH HHS P30 ES013508
6 · The paper itself

Abstract

Malignant mesothelioma (MM) is an aggressive tumor arising from mesothelial linings of the serosal cavities. Pleural space is the most common site, accounting for about 80% of cases, while peritoneum makes up the majority of the remaining 20%. While histologically similar, tumors from these sites are epidemiologically and clinically distinct and their attribution to asbestos exposure differs. We compared DNA array-based findings from 48 epithelioid peritoneal MMs and 41 epithelioid pleural MMs to identify similarities and differences in copy number alterations (CNAs). Losses in 3p (BAP1 gene), 9p (CDKN2A) and 22q (NF2) were seen in tumors from both tumor sites, although CDKN2A and NF2 losses were seen at a higher rate in pleural disease (p<0.01). Overall, regions of copy number gain were more common in peritoneal MM, whereas losses were more common in pleural MM, with regions of loss containing known tumor suppressor genes and regions of gain encompassing genes encoding receptor tyrosine kinase pathway members. Cases with known asbestos causation (n = 32 ) were compared with those linked to radiation exposure (n = 9 ). Deletions in 6q, 14q, 17p and 22q, and gain of 17q were seen in asbestos-associated but not radiation-related cases. As reported in post-radiation sarcoma, gains outnumbered losses in radiation-associated MM. The patterns of genomic imbalances suggest overlapping and distinct molecular pathways in MM of the pleura and peritoneum, and that differences in causation (i.e., asbestos vs. radiation) may account for some of these site-dependent differences.

Indexed as

DNA Copy Number VariationsAbdominal NeoplasmsGenome-Wide Association StudyHumansLung NeoplasmsMesotheliomaMesothelioma, MalignantMutationPeritoneal NeoplasmsPleural NeoplasmsAsbestosDNA copy numbergenomic imbalancesPeritoneal mesotheliomaradiation

Identifiers

PMID26853494
PMCPMC4847993
OpenAlexW2266849806

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.