Evidence map›Paper›PMID 26851213›Full record

ArticleDevelopmental biology2016

A role for tuned levels of nucleosome remodeler subunit ACF1 during Drosophila oogenesis.

Kenneth Börner, Dhawal Jain, Paula Vazquez-Pianzola, Sandra Vengadasalam, Natascha Steffen, Dmitry V Fyodorov, Pavel Tomancak, Alexander Konev, Beat Suter, Peter B Becker

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
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  5. Genetics · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Kenneth BörnerBiomedical Center and Center for Integrated Protein Science Munich, Ludwig-Maximilians-University, Munich, Germany.
Dhawal JainBiomedical Center and Center for Integrated Protein Science Munich, Ludwig-Maximilians-University, Munich, Germany.
Paula Vazquez-PianzolaInstitute of Cell Biology, University of Bern, 3012 Bern, Switzerland.
Sandra VengadasalamBiomedical Center and Center for Integrated Protein Science Munich, Ludwig-Maximilians-University, Munich, Germany.
Natascha SteffenBiomedical Center and Center for Integrated Protein Science Munich, Ludwig-Maximilians-University, Munich, Germany.
Dmitry V FyodorovAlbert Einstein College of Medicine, Cell Biology, Bronx, NY 10461, USA.
Pavel TomancakMax Planck Institute of Molecular Cell Biology and Genetics, D-01307 Dresden, Germany.
Alexander KonevDepartment of Radiation and Molecular Biophysics, St. Petersburg Nuclear Physics Institute, Gatchina 188300, Russia.
Beat SuterInstitute of Cell Biology, University of Bern, 3012 Bern, Switzerland.
Peter B BeckerBiomedical Center and Center for Integrated Protein Science Munich, Ludwig-Maximilians-University, Munich, Germany. Electronic address: pbecker@med.uni-muenchen.de.
Ludwig-Maximilians-Universität München · DEUniversity of Bern · CHCenter for Integrated Protein Science Munich · DEMax Planck Institute of Molecular Cell Biology and Genetics · DE

Funding

Resource Component: Acquisition, maintenance and distribution of Drosophila stocksP40OD018537 · OD · TRUSTEES OF INDIANA UNIVERSITY · PI Annette L. Parks · 2014 to 2026
$13.5M
Drosophila Transgenic RNAi Resource ProjectR01GM084947 · NIGMS · HARVARD MEDICAL SCHOOL · PI PERRIMON, NORBERT · 2008 to 2019
$9.8M
Chromatin Transitions during Early Embryonic Development in Drosophila melanogasterR01GM074233 · NIGMS · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI FYODOROV, DMITRY V · 2005 to 2021
$5.8M
NIGMS NIH HHS R01 GM074233NIGMS NIH HHS R01 GM084947NIH HHS NIH P40OD018537NIH HHS P40 OD018537PHS HHS NIH/NIGMSR01-GM084947
6 · The paper itself

Abstract

The Chromatin Accessibility Complex (CHRAC) consists of the ATPase ISWI, the large ACF1 subunit and a pair of small histone-like proteins, CHRAC-14/16. CHRAC is a prototypical nucleosome sliding factor that mobilizes nucleosomes to improve the regularity and integrity of the chromatin fiber. This may facilitate the formation of repressive chromatin. Expression of the signature subunit ACF1 is restricted during embryonic development, but remains high in primordial germ cells. Therefore, we explored roles for ACF1 during Drosophila oogenesis. ACF1 is expressed in somatic and germline cells, with notable enrichment in germline stem cells and oocytes. The asymmetrical localization of ACF1 to these cells depends on the transport of the Acf1 mRNA by the Bicaudal-D/Egalitarian complex. Loss of ACF1 function in the novel Acf1(7) allele leads to defective egg chambers and their elimination through apoptosis. In addition, we find a variety of unusual 16-cell cyst packaging phenotypes in the previously known Acf1(1) allele, with a striking prevalence of egg chambers with two functional oocytes at opposite poles. Surprisingly, we found that the Acf1(1) deletion--despite disruption of the Acf1 reading frame--expresses low levels of a PHD-bromodomain module from the C-terminus of ACF1 that becomes enriched in oocytes. Expression of this module from the Acf1 genomic locus leads to packaging defects in the absence of functional ACF1, suggesting competitive interactions with unknown target molecules. Remarkably, a two-fold overexpression of CHRAC (ACF1 and CHRAC-16) leads to increased apoptosis and packaging defects. Evidently, finely tuned CHRAC levels are required for proper oogenesis.

Indexed as

OogenesisAllelesAnimalsApoptosisChromatin Assembly and DisassemblyDrosophila melanogasterDrosophila ProteinsFemaleGene Expression Regulation, DevelopmentalIn Situ HybridizationMaleNucleosomesOocytesOvaryPhenotypeProtein Structure, TertiaryAcf protein, DrosophilaDrosophila ProteinsNucleosomesRNA, Small InterferingTranscription FactorsBromodomainGermariumISWI ATPaseNucleosome remodelingPHD finger

Identifiers

PMID26851213
PMCPMC5012898
OpenAlexW2257909475

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.