Evidence map›Paper›PMID 26850571›Full record

ArticleAmerican journal of medical genetics. Part A2016

Duplication 2p25 in a child with clinical features of CHARGE syndrome.

Ethan D Sperry, Jane L Schuette, Conny M A van Ravenswaaij-Arts, Glenn E Green, Donna M Martin

Open access · greenAbstract readCase Reports
In one paragraph

Article in American journal of medical genetics. Part A, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Eyes on CHARGE syndrome: Roles of CHD7 in ocular development.Frontiers in cell and developmental biology · 2022
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Ethan D SperryDepartment of Human Genetics, The University of Michigan, Ann Arbor, Michigan.
Jane L SchuetteDepartment of Human Genetics, The University of Michigan, Ann Arbor, Michigan.
Conny M A van Ravenswaaij-ArtsDepartment of Genetics, University of Groningen, University Medical Centre, Groningen, The Netherlands.
Glenn E GreenDepartment of Otolaryngology-Head and Neck Surgery, The University of Michigan, Ann Arbor, Michigan.
Donna M MartinDepartment of Human Genetics, The University of Michigan, Ann Arbor, Michigan.
University of Michigan–Ann Arbor · USMichigan Medicine · USUniversity of Groningen · NL

Funding

MICHIGAN MEDICAL SCIENTIST TRAINING PROGRAMT32GM007863 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L. · 1985 to 2024
$38.3M
Sensory Mechanisms and Disorders - Administrative SupplementT32DC000011 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Michael Thomas Roberts · 1989 to 2026
$9.5M
Developmental Mechanisms of the Chromodomain Gene Chd7R01DC009410 · NIDCD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTIN, DONNA M. · 2009 to 2018
$3.7M
NIDCD NIH HHS 5R01-DC009410NIDCD NIH HHS 5T32-DC000011NIDCD NIH HHS R01 DC009410NIDCD NIH HHS T32 DC000011NIGMS NIH HHS 2T32-GM007863NIGMS NIH HHS T32 GM007863
6 · The paper itself

Abstract

CHARGE syndrome is a dominant disorder characterized by ocular colobomata, heart defects, choanal atresia, retardation of growth and development, genital hypoplasia, and ear abnormalities including deafness and vestibular disorders. The majority of individuals with CHARGE have pathogenic variants in the gene encoding CHD7, a chromatin remodeling protein. Here, we present a 15-year-old girl with clinical features of CHARGE syndrome and a de novo 6.5 Mb gain of genomic material at 2p25.3-p25.2. The duplicated region contained 24 genes, including the early and broadly expressed transcription factor gene SOX11. Analysis of 28 other patients with CHARGE showed no SOX11 copy number changes or pathogenic sequence variants. To our knowledge, this child's chromosomal abnormality is unique and represents the first co-occurrence of duplication 2p25 and clinical features of CHARGE syndrome. We compare our patient's phenotype to ten previously published patients with isolated terminal duplication 2p, and elaborate on the clinical diagnosis of CHARGE in the context of atypical genetic findings.

Indexed as

Abnormalities, MultipleCHARGE SyndromeChildChromosomes, Human, Pair 2DNA-Binding ProteinsDNA Copy Number VariationsDNA HelicasesFemaleGene DuplicationGenetic TestingHumansMutationSOXC Transcription FactorsTrisomyCHD7 protein, humanDNA-Binding ProteinsDNA HelicasesSOX11 protein, humanSOXC Transcription FactorsCHARGE syndromeduplication 2p25gene duplicationtrisomy 2p

Identifiers

PMID26850571
PMCPMC5117441
OpenAlexW2283722152

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.