Evidence map›Paper›PMID 26848979›Full record

ArticleOncotarget2016

Aberrant epigenetic regulation in clear cell sarcoma of the kidney featuring distinct DNA hypermethylation and EZH2 overexpression.

Jenny Karlsson, Anders Valind, Caroline Jansson, Maureen J O'Sullivan, Linda Holmquist Mengelbier, David Gisselsson

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

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  13. Clear cell sarcoma of the kidney in children: a clinopathologic analysis of three cases.International journal of clinical and experimental pathology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Jenny KarlssonDepartment of Clinical Genetics, Lund University, University and Regional Laboratories, Lund, Sweden.
Anders ValindDepartment of Clinical Genetics, Lund University, University and Regional Laboratories, Lund, Sweden.
Caroline JanssonDepartment of Clinical Genetics, Lund University, University and Regional Laboratories, Lund, Sweden.
Maureen J O'SullivanNational Children's Research Centre, Our Lady's Children's Hospital, Crumlin, Dublin, Ireland.
Linda Holmquist MengelbierDepartment of Clinical Genetics, Lund University, University and Regional Laboratories, Lund, Sweden.
David GisselssonDepartment of Clinical Genetics, Lund University, University and Regional Laboratories, Lund, Sweden.
Lund University · SENational Children’s Research Centre · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The global methylation profile and the mutational status of 633 specific epigenetic regulators were analyzed in the pediatric tumor clear cell sarcoma of the kidney (CCSK). Methylation array analyses of 30 CCSKs revealed CCSK tumor DNA to be globally hypermethylated compared to Wilms tumor, normal fetal kidney, and adult kidney. The aberrant methylation pattern of CCSKs was associated with activation of genes involved in embryonic processes and with silencing of genes linked to normal kidney function. No epigenetic regulator was recurrently mutated in our cohort, but a mutation in the key epigenetic regulator EZH2 was discovered in one case. EZH2 mRNA was significantly higher in CCSK compared to Wilms tumor and normal kidney, and the EZH2 protein was strongly expressed in more than 90 % of CCSK tumor cells in 9/9 tumors analyzed. This was in striking contrast to the lack of EZH2 protein expression in Wilms tumor stromal elements, indicating that EZH2 could be explored further as a diagnostic marker and a potential drug target for CCSK.

Indexed as

AdultChildDNA MethylationEnhancer of Zeste Homolog 2 ProteinEpigenesis, GeneticFemaleHumansKidney NeoplasmsMaleSarcoma, Clear CellEnhancer of Zeste Homolog 2 ProteinEZH2 protein, humanCCSKEZH2hypermethylationpediatric tumorsWilms tumor

Identifiers

PMID26848979
PMCPMC4905462
OpenAlexW2289399175

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.