ArticleViruses2016
Metagenomic Analysis of Virioplankton of the Subtropical Jiulong River Estuary, China.
Article in Viruses, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed.
- DNA viruses are constrained to ecological niches and share similar environmental adaptations with hosts.Nature communications · 2026Article
- Variations of the Virome in Raw and Treated Water: A One-Year Follow-Up at Six Different Drinking Water Treatment Plants.Environmental microbiology reports · 2025Article
- Deciphering the comprehensive microbiome of glacier-fed Ganges and functional aspects: implications for one health.Microbiology spectrum · 2025Article
- Salinity-driven shifts in estuarine viral community composition and diversity near the Shenzhen coast.Applied and environmental microbiology · 2025Article
- Environmental gradients shape viral-host dynamics in the Pearl River estuary.ISME communications · 2025Article
- RNA-Sequencing Analysis of the Viral Community in Yellow Catfish (Animals : an open access journal from MDPI · 2024Article
- Virome Analysis of Paddy Floodwater in Two Cropping Seasons.Indian journal of microbiology · 2024Article
- Community Structure, Drivers, and Potential Functions of Different Lifestyle Viruses in Chaohu Lake.Viruses · 2024Article
- Metaviromic analyses of DNA virus community from sediments of the N-Choe stream, North India.Virus research · 2023Article
- Diversity, distribution, and functional potentials of magroviruses from marine and brackish waters.Frontiers in microbiology · 2023Article
- Metagenomic analysis of viral community in the Yangtze River expands known eukaryotic and prokaryotic virus diversity in freshwater.Virologica Sinica · 2022Article
- Viral Metagenomics Reveals Widely Diverse Viral Community of Freshwater Amazonian Lake.Frontiers in public health · 2022Article
- Prophage Genomics and Ecology in the FamilyMicroorganisms · 2021Article
- Uncultivated Viral Populations Dominate Estuarine Viromes on the Spatiotemporal Scale.mSystems · 2021Article
- Diverse and unique viruses discovered in the surface water of the East China Sea.BMC genomics · 2020Article
- Impacts of Freshwater and Seawater Mixing on the Production and Decay of Virioplankton in a Subtropical Estuary.Microbial ecology · 2019Article
- Article
- Metagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea.Frontiers in microbiology · 2019Article
- Genetic and functional diversity of double-stranded DNA viruses in a tropical monsoonal estuary, India.Scientific reports · 2018Article
- Review
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Viruses are the most abundant biological entities in the oceans, and encompass a significant reservoir of genetic diversity. However, little is known about their biodiversity in estuary environments, which represent a highly dynamic and potentially more diverse habitat. Here, we report a metagenomic analysis of the dsDNA viral community from the Jiulong River Estuary (JRE), China, and provide a comparative analysis with other closely related environments. The results showed that the majority of JRE virome did not show any significant similarity to the database. For the major viral group (Caudovirales) detected in the sample, Podoviridae (44.88%) were the most abundant family, followed by Siphoviridae (32.98%) and Myoviridae (17.32%). The two most abundant viruses identified in the virome were phages HTVC010P and HMO-2011, which infect bacteria belonging to marine SAR11 and SAR116 clades, respectively. Two contigs larger than 20 kb, which show similar overall genome architectures to Celeribacter phage P12053L and Thalosomonas phage BA3, respectively, were generated during assembly. Comparative analysis showed that the JRE virome was more similar to marine viromes than to freshwater viromes, and shared a relative coarse-grain genetic overlap (averaging 14.14% ± 1.68%) with other coastal viromes. Our study indicated that the diversity and community structure of the virioplankton found in JRE were mainly affected by marine waters, with less influence from freshwater discharge.
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