Evidence map›Paper›PMID 26848096›Full record

ArticlePlant physiology2016

Evolution of VRN2/Ghd7-Like Genes in Vernalization-Mediated Repression of Grass Flowering.

Daniel P Woods, Meghan A McKeown, Yinxin Dong, Jill C Preston, Richard M Amasino

Abstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. CCT domain-containing genes in cereal crops: flowering time and beyond.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Review
  13. Article
  14. Sequencing 4.3 million mutations in wheat promoters to understand and modify gene expression.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Flowering time runs hot and cold.Plant physiology · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daniel P WoodsLaboratory of Genetics, U.S. Department of Energy Great Lakes Bioenergy Research Center (D.P.W., R.M.A.), and Department of Biochemistry (D.P.W., Y.D., R.M.A.), University of Wisconsin, Madison, Wisconsin 53706;Department of Plant Biology, University of Vermont, Burlington, Vermont 05405 (M.A.M., J.C.P.); andCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, People's Republic of China (Y.D.).ORCID 0000-0002-1498-5707
Meghan A McKeownLaboratory of Genetics, U.S. Department of Energy Great Lakes Bioenergy Research Center (D.P.W., R.M.A.), and Department of Biochemistry (D.P.W., Y.D., R.M.A.), University of Wisconsin, Madison, Wisconsin 53706;Department of Plant Biology, University of Vermont, Burlington, Vermont 05405 (M.A.M., J.C.P.); andCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, People's Republic of China (Y.D.).
Yinxin DongLaboratory of Genetics, U.S. Department of Energy Great Lakes Bioenergy Research Center (D.P.W., R.M.A.), and Department of Biochemistry (D.P.W., Y.D., R.M.A.), University of Wisconsin, Madison, Wisconsin 53706;Department of Plant Biology, University of Vermont, Burlington, Vermont 05405 (M.A.M., J.C.P.); andCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, People's Republic of China (Y.D.).ORCID 0000-0002-0187-4135
Jill C PrestonLaboratory of Genetics, U.S. Department of Energy Great Lakes Bioenergy Research Center (D.P.W., R.M.A.), and Department of Biochemistry (D.P.W., Y.D., R.M.A.), University of Wisconsin, Madison, Wisconsin 53706;Department of Plant Biology, University of Vermont, Burlington, Vermont 05405 (M.A.M., J.C.P.); andCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, People's Republic of China (Y.D.).ORCID 0000-0002-9211-5061
Richard M AmasinoLaboratory of Genetics, U.S. Department of Energy Great Lakes Bioenergy Research Center (D.P.W., R.M.A.), and Department of Biochemistry (D.P.W., Y.D., R.M.A.), University of Wisconsin, Madison, Wisconsin 53706;Department of Plant Biology, University of Vermont, Burlington, Vermont 05405 (M.A.M., J.C.P.); andCollege of Horticulture, Northwest A&F University, Yangling, Shaanxi 712100, People's Republic of China (Y.D.) amasino@biochem.wisc.edu.ORCID 0000-0003-3068-5402

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flowering of many plant species is coordinated with seasonal environmental cues such as temperature and photoperiod. Vernalization provides competence to flower after prolonged cold exposure, and a vernalization requirement prevents flowering from occurring prior to winter. In winter wheat (Triticum aestivum) and barley (Hordeum vulgare), three genes VRN1, VRN2, and FT form a regulatory loop that regulates the initiation of flowering. Prior to cold exposure, VRN2 represses FT. During cold, VRN1 expression increases, resulting in the repression of VRN2, which in turn allows activation of FT during long days to induce flowering. Here, we test whether the circuitry of this regulatory loop is conserved across Pooideae, consistent with their niche transition from the tropics to the temperate zone. Our phylogenetic analyses of VRN2-like genes reveal a duplication event occurred before the diversification of the grasses that gave rise to a CO9 and VRN2/Ghd7 clade and support orthology between wheat/barley VRN2 and rice (Oryza sativa) Ghd7 Our Brachypodium distachyon VRN1 and VRN2 knockdown and overexpression experiments demonstrate functional conservation of grass VRN1 and VRN2 in the promotion and repression of flowering, respectively. However, expression analyses in a range of pooids demonstrate that the cold repression of VRN2 is unique to core Pooideae such as wheat and barley. Furthermore, VRN1 knockdown in B. distachyon demonstrates that the VRN1-mediated suppression of VRN2 is not conserved. Thus, the VRN1-VRN2 feature of the regulatory loop appears to have evolved late in the diversification of temperate grasses.

Indexed as

Evolution, MolecularGenes, PlantBayes TheoremBrachypodiumCold TemperatureFlowersGene DuplicationGene Expression Regulation, PlantGene Knockdown TechniquesPhylogenyPlant ProteinsPlant Proteins

Identifiers

PMID26848096
PMCPMC4825116

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.