Evidence map›Paper›PMID 26847652›Full record

ArticleBMC genomics2016

A betabaculovirus encoding a gp64 homolog.

Daniel M P Ardisson-Araújo, Bruna T Pereira, Fernando L Melo, Bergmann M Ribeiro, Sônia N Báo, Paolo M de A Zanotto, Flávio Moscardi, Elliot W Kitajima, Daniel R Sosa-Gomez, José L C Wolff

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Daniel M P Ardisson-AraújoDepartamento de Biologia Celular, Instituto de Ciências Biológicas, Universidade de Brasília, Brasília, DF, Brazil. daniel_ardisson@yahoo.com.br.
Bruna T PereiraPrograma de Pós-graduação Interunidades em Biotecnologia, Instituto de Ciências Biomédicas (ICB), Universidade de São Paulo (USP), São Paulo, São Paulo, Brazil. bruna.btp13@gmail.com.
Fernando L MeloDepartamento de Biologia Celular, Instituto de Ciências Biológicas, Universidade de Brasília, Brasília, DF, Brazil. flucasmelo@gmail.com.
Bergmann M RibeiroDepartamento de Biologia Celular, Instituto de Ciências Biológicas, Universidade de Brasília, Brasília, DF, Brazil. bergmann@unb.br.
Sônia N BáoDepartamento de Biologia Celular, Instituto de Ciências Biológicas, Universidade de Brasília, Brasília, DF, Brazil. snbao@unb.br.
Paolo M de A ZanottoLaboratório de Evolução Molecular e Bioinformática (LEMB-ICB), Universidade de São Paulo, São Paulo, SP, Brazil. pzanotto@usp.br.
Flávio MoscardiEmpresa Brasileira de Pesquisa Agropecuária, Centro Nacional de Pesquisa de Soja, Londrina, Paraná PR, Brazil.
Elliot W KitajimaNAP/MEPA, Departamento de Fitopatologia e Nematologia, ESALQ, Universidade de São Paulo, Piracicaba, SP, Brazil. ewkitaji@usp.br.
Daniel R Sosa-GomezEmpresa Brasileira de Pesquisa Agropecuária, Centro Nacional de Pesquisa de Soja, Londrina, Paraná PR, Brazil. daniel.sosa-gomez@embrapa.br.
José L C WolffLaboratório de Biologia Molecular e Virologia, Centro de Ciências Biológicas e da Saúde (CCBS), Universidade Presbiteriana Mackenzie, São Paulo, SP, Brazil. joseluiz.wolff@mackenzie.br.
Universidade de Brasília · BRBrazilian Agricultural Research Corporation · BRUniversidade de São Paulo · BRUniversidade Metodista de São Paulo · BRUniversidade Presbiteriana Mackenzie · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA betabaculovirus (DisaGV) was isolated from Diatraea saccharalis (Lepidoptera: Crambidae), one of the most important insect pests of the sugarcane and other monocot cultures in Brazil.

resultsThe complete genome sequence of DisaGV was determined using the 454-pyrosequencing method. The genome was 98,392 bp long, which makes it the smallest lepidopteran-infecting baculovirus sequenced to date. It had a G + C content of 29.7% encoding 125 putative open reading frames (ORF). All the 37 baculovirus core genes and a set of 19 betabaculovirus-specific genes were found. A group of 13 putative genes was not found in any other baculovirus genome sequenced so far. A phylogenetic analysis indicated that DisaGV is a member of Betabaculovirus genus and that it is a sister group to a cluster formed by ChocGV, ErelGV, PiraGV isolates, ClanGV, CaLGV, CpGV, CrleGV, AdorGV, PhopGV and EpapGV. Surprisingly, we found in the DisaGV genome a G protein-coupled receptor related to lepidopteran and other insect virus genes and a gp64 homolog, which is likely a product of horizontal gene transfer from Group 1 alphabaculoviruses.

conclusionDisaGV represents a distinct lineage of the genus Betabaculovirus. It is closely related to the CpGV-related group and presents the smallest genome in size so far. Remarkably, we found a homolog of gp64, which was reported solely in group 1 alphabaculovirus genomes so far.

Indexed as

BaculoviridaeBase CompositionBase SequenceBrazilGene OrderGenome, ViralGenomicsMolecular Sequence DataOpen Reading FramesPhylogenySaccharumViral Envelope ProteinsViral ProteinsViral Envelope ProteinsViral Proteins

Identifiers

PMID26847652
PMCPMC4741009
OpenAlexW2259332141

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.