Evidence map›Paper›PMID 26847646›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2016

Distribution and haplotype diversity of WKS resistance genes in wild emmer wheat natural populations.

Lin Huang, Hanan Sela, Lihua Feng, Qijiao Chen, Tamar Krugman, Jun Yan, Jorge Dubcovsky, Tzion Fahima

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Fine Mapping of Stripe-Rust-Resistance GenePlants (Basel, Switzerland) · 2022
    Article
  7. Article
  8. Distribution and Nucleotide Diversity ofPathogens (Basel, Switzerland) · 2020
    Article
  9. Review
  10. Contribution of recent technological advances to future resistance breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Lin HuangInstitute of Evolution and the Department of Evolutionary and Environmental Biology, University of Haifa, 3498838, Haifa, Israel.
Hanan SelaInstitute of Evolution and the Department of Evolutionary and Environmental Biology, University of Haifa, 3498838, Haifa, Israel.
Lihua FengInstitute of Evolution and the Department of Evolutionary and Environmental Biology, University of Haifa, 3498838, Haifa, Israel.
Qijiao ChenInstitute of Evolution and the Department of Evolutionary and Environmental Biology, University of Haifa, 3498838, Haifa, Israel.
Tamar KrugmanInstitute of Evolution and the Department of Evolutionary and Environmental Biology, University of Haifa, 3498838, Haifa, Israel.
Jun YanFaculty of Industrial Biotechnology, Chengdu University, Chengdu, 610106, China.
Jorge DubcovskyDepartment of Plant Sciences, University of California, Davis, CA, 95616, USA.
Tzion FahimaInstitute of Evolution and the Department of Evolutionary and Environmental Biology, University of Haifa, 3498838, Haifa, Israel. fahima@research.haifa.ac.il.
University of Haifa · ILChengdu University · CNUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageThe wheat stripe rust resistance gene Yr36 ( WKS1 ) with a unique kinase-START domain architecture is highly conserved in wild emmer wheat natural populations. Wild emmer wheat (Triticum dicoccoides) populations have developed various resistance strategies against the stripe rust pathogen Puccinia striiformis f. sp. tritici (Pst). The wild emmer gene, Yr36 (WKS1), which confers partial resistance to a broad spectrum of Pst races, is composed of a kinase and a START lipid-binding domain, a unique gene architecture found only in the Triticeae tribe. The analysis of 435 wild emmer accessions from a broad range of natural habitats revealed that WKS1 and its paralogue WKS2 are present only in the southern distribution range of wild emmer in the Fertile Crescent, supporting the idea that wheat domestication occurred in the northern populations. An analysis of full-length WKS1 sequence from 54 accessions identified 15 different haplotypes and very low-nucleotide diversity (π = 0.00019). The high level of WKS1 sequence conservation among wild emmer populations is in contrast to the high level of diversity previously observed in NB-LRR genes (e.g., Lr10 and Pm3). This phenomenon may reflect the different resistance mechanisms and different evolutionary pathways that shaped these genes, and may shed light on the evolution of genes that confer partial resistance to stripe rust. Only five WKS1 coding sequence haplotypes were revealed among all tested accessions, encoding four different putative WKS1 proteins (designated P0, P1, P2, and P3). Infection tests showed that P0, P1, and P3 haplotypes display a resistance response, while P2 displayed a susceptible response. These results show that the WKS1 proteins (P0, P1, and P3) can be useful to improve wheat resistance to stripe rust.

Indexed as

Genes, PlantGenetics, PopulationBasidiomycotaClimateConserved SequenceDisease ResistanceDNA, PlantEvolution, MolecularGene FrequencyHaplotypesMiddle EastPlant DiseasesSequence Analysis, DNATriticumDNA, Plant

Identifiers

PMID26847646
OpenAlexW2338628760

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.