ArticleScientific reports2016
Chloroplast Phylogenomic Inference of Green Algae Relationships.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.
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Who cites it
38 citing papers in PubMed.
- Green Extraction of Bioactive Compounds from Marine Macroalgae: Chemistry, Pharmacological Activities, and Biotechnological Applications.Marine drugs · 2026Review
- ChloroScan: Recovering Plastid Genome Bins From Metagenomic Data.Molecular ecology resources · 2026Article
- Extensive diversity of Symbiochlorum-related algae from environmental sequences and culture strains supports the description of the new family Symbiochloraceae (Ulvophyceae, Chlorophyta).Journal of phycology · 2025Article
- Comparative genomics and evolutionary analyses of Sphaeropleales.Frontiers in plant science · 2025Article
- Comparative analysis of 12 water lily plastid genomes reveals genomic divergence and evolutionary relationships in early flowering plants.Marine life science & technology · 2024Article
- Article
- The Chloroplast Genome of the Lichen PhotobiontGenes · 2022Article
- Phylotranscriptomic insights into a Mesoproterozoic-Neoproterozoic origin and early radiation of green seaweeds (Ulvophyceae).Nature communications · 2022Article
- Comparison ofLife (Basel, Switzerland) · 2022Article
- Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae.Genome biology and evolution · 2021Article
- The complete chloroplast genome of Stauntonia chinensis and compared analysis revealed adaptive evolution of subfamily Lardizabaloideae species in China.BMC genomics · 2021Article
- Six Newly Sequenced Chloroplast Genomes From Trentepohliales: The Inflated Genomes, Alternative Genetic Code and Dynamic Evolution.Frontiers in plant science · 2021Article
- Screening and verification of extranuclear genetic markers in green tide algae from the Yellow Sea.PloS one · 2021Article
- Chloroplast Genome Sequencing, Comparative Analysis, and Discovery of Unique Cytoplasmic Variants in Pomegranate (Frontiers in genetics · 2021Article
- Complete Chloroplast Genome Characterization ofPlants (Basel, Switzerland) · 2020Article
- Taxonomic scheme of the order Chaetophorales (Chlorophyceae, Chlorophyta) based on chloroplast genomes.BMC genomics · 2020Article
- The OPR Protein MTHI1 Controls the Expression of Two Different Subunits of ATP Synthase CFo inThe Plant cell · 2020Article
- Plastid genomes ofJournal of genetics · 2020Article
- Complete Chloroplast Genomes ofPlants (Basel, Switzerland) · 2019Article
- Dynamic evolution of mitochondrial genomes in Trebouxiophyceae, including the first completely assembled mtDNA from a lichen-symbiont microalga (Trebouxia sp. TR9).Scientific reports · 2019Article
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6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The green algal phylum Chlorophyta has six diverse classes, but the phylogenetic relationship of the classes within Chlorophyta remains uncertain. In order to better understand the ancient Chlorophyta evolution, we have applied a site pattern sorting method to study compositional heterogeneity and the model fit in the green algal chloroplast genomic data. We show that the fastest-evolving sites are significantly correlated with among-site compositional heterogeneity, and these sites have a much poorer fit to the evolutionary model. Our phylogenomic analyses suggest that the class Chlorophyceae is a monophyletic group, and the classes Ulvophyceae, Trebouxiophyceae and Prasinophyceae are non-monophyletic groups. Our proposed phylogenetic tree of Chlorophyta will offer new insights to investigate ancient green algae evolution, and our analytical framework will provide a useful approach for evaluating and mitigating the potential errors of phylogenomic inferences.
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