Evidence map›Paper›PMID 26845438›Full record

ArticlePLoS pathogens2016

A Computationally Designed Hemagglutinin Stem-Binding Protein Provides In Vivo Protection from Influenza Independent of a Host Immune Response.

Merika Treants Koday, Jorgen Nelson, Aaron Chevalier, Michael Koday, Hannah Kalinoski, Lance Stewart, Lauren Carter, Travis Nieusma, Peter S Lee, Andrew B Ward and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 56 citations in OpenAlex.

  1. Antibody Hotspot-CentricACS medicinal chemistry letters · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. De novo protein design by inversion of the AlphaFold structure prediction network.Protein science : a publication of the Protein Society · 2023
    Article
  6. Review
  7. Review
  8. Article
  9. Antiviral Peptides as Anti-Influenza Agents.International journal of molecular sciences · 2022
    Review
  10. Article
  11. Protein design via deep learning.Briefings in bioinformatics · 2022
    Review
  12. Small Molecule Inhibitors of Influenza Virus Entry.Pharmaceuticals (Basel, Switzerland) · 2021
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Antiviral peptides as promising therapeutic drugs.Cellular and molecular life sciences : CMLS · 2019
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Merika Treants KodayDepartment of Microbiology, University of Washington, Seattle, Washington, United States of America.
Jorgen NelsonInstitute for Protein Design, Department of Biochemistry, University of Washington, Seattle, Washington, United States of America.
Aaron ChevalierInstitute for Protein Design, Department of Biochemistry, University of Washington, Seattle, Washington, United States of America.
Michael KodayWashington National Primate Research Center, University of Washington, Seattle, Washington, United States of America.
Hannah KalinoskiDepartment of Microbiology, University of Washington, Seattle, Washington, United States of America.
Lance StewartInstitute for Protein Design, Department of Biochemistry, University of Washington, Seattle, Washington, United States of America.
Lauren CarterInstitute for Protein Design, Department of Biochemistry, University of Washington, Seattle, Washington, United States of America.
Travis NieusmaDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America.
Peter S LeeDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America.
Andrew B WardDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America.
Ian A WilsonDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, California, United States of America.
Ashley DagleyInstitute for Antiviral Research, Department of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, Utah, United States of America.
Donald F SmeeInstitute for Antiviral Research, Department of Animal, Dairy and Veterinary Sciences, Utah State University, Logan, Utah, United States of America.
David BakerInstitute for Protein Design, Department of Biochemistry, University of Washington, Seattle, Washington, United States of America.
Deborah Heydenburg FullerDepartment of Microbiology, University of Washington, Seattle, Washington, United States of America.
University of Washington · USScripps Research Institute · USUtah State University · USHoward Hughes Medical Institute · US

Funding

Washington National Primate Research CenterP51OD010425 · OD · UNIVERSITY OF WASHINGTON · PI Mari Ostendorf · 2012 to 2026
$201.8M
PATHOGENESIS AND IMMUNOLOGY OF DISEASET32AI007244 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 1985 to 2022
$8.8M
DNA Vaccine for Seasonal & Pandemic InfluenzaU01AI074509 · NIAID · UNIVERSITY OF WASHINGTON · PI FULLER, DEBORAH H. · 2007 to 2011
$5.8M
Structural insights into pandemic and emerging influenza virusesR56AI099275 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI WILSON, IAN A · 2013 to 2013
$823k
Mucosally-delivered HA stem binding antiviral for influenzaR21AI119258 · NIAID · UNIVERSITY OF WASHINGTON · PI FULLER, DEBORAH H. · 2015 to 2016
$477k
Optimization of a computationally designed antiviral for influenzaR41AI122431 · NIAID · VIRVIO, INC. · PI FULLER, DEBORAH H., KODAY, MERIKA TREANTS · 2016 to 2016
$209k
Howard Hughes Medical InstituteNIAID NIH HHS HHSN272201000039INIAID NIH HHS R21 AI119258NIAID NIH HHS R41 AI122431NIAID NIH HHS R56 AI099275NIAID NIH HHS T32 AI007244NIAID NIH HHS U01 AI074509NIAID NIH HHS U01AI074509NIH HHS P51 OD010425PHS HHS HHSN27200012/A66
6 · The paper itself

Abstract

Broadly neutralizing antibodies targeting a highly conserved region in the hemagglutinin (HA) stem protect against influenza infection. Here, we investigate the protective efficacy of a protein (HB36.6) computationally designed to bind with high affinity to the same region in the HA stem. We show that intranasal delivery of HB36.6 affords protection in mice lethally challenged with diverse strains of influenza independent of Fc-mediated effector functions or a host antiviral immune response. This designed protein prevents infection when given as a single dose of 6.0 mg/kg up to 48 hours before viral challenge and significantly reduces disease when administered as a daily therapeutic after challenge. A single dose of 10.0 mg/kg HB36.6 administered 1-day post-challenge resulted in substantially better protection than 10 doses of oseltamivir administered twice daily for 5 days. Thus, binding of HB36.6 to the influenza HA stem region alone, independent of a host response, is sufficient to reduce viral infection and replication in vivo. These studies demonstrate the potential of computationally designed binding proteins as a new class of antivirals for influenza.

Indexed as

AnimalsAntibodies, NeutralizingAntibodies, ViralCarrier ProteinsCytokinesHemagglutinin Glycoproteins, Influenza VirusHumansInfluenza A virusInfluenza, HumanMiceModels, MolecularMutationVirus ReplicationAntibodies, NeutralizingAntibodies, ViralCarrier ProteinsCytokinesHemagglutinin Glycoproteins, Influenza Virus

Identifiers

PMID26845438
PMCPMC4742065
OpenAlexW2288042330

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.