Evidence map›Paper›PMID 26842269›Full record

ArticleProteomics2016

Evaluation of quantum dot immunofluorescence and a digital CMOS imaging system as an alternative to conventional organic fluorescence dyes and laser scanning for quantifying protein microarrays.

Aarti Jain, Omid Taghavian, Derek Vallejo, Emmanuel Dotsey, Dan Schwartz, Florian G Bell, Chad Greef, D Huw Davies, Jennipher Grudzien, Abraham P Lee and 2 more

Abstract readEvaluation Study
In one paragraph

Article in Proteomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Aarti JainDivision of Infectious Diseases, Department of Medicine, University of California Irvine, Irvine, CA, USA.
Omid TaghavianDivision of Infectious Diseases, Department of Medicine, University of California Irvine, Irvine, CA, USA.
Derek VallejoDepartment of Biomedical Engineering, University of California Irvine, Irvine, CA, USA.
Emmanuel DotseyDivision of Infectious Diseases, Department of Medicine, University of California Irvine, Irvine, CA, USA.
Dan SchwartzGrace Bio-Labs, Inc, Bend, OR, USA.
Florian G BellGrace Bio-Labs, Inc, Bend, OR, USA.
Chad GreefGrace Bio-Labs, Inc, Bend, OR, USA.
D Huw DaviesDivision of Infectious Diseases, Department of Medicine, University of California Irvine, Irvine, CA, USA.
Jennipher GrudzienGrace Bio-Labs, Inc, Bend, OR, USA.
Abraham P LeeDepartment of Biomedical Engineering, University of California Irvine, Irvine, CA, USA.
Philip L FelgnerDivision of Infectious Diseases, Department of Medicine, University of California Irvine, Irvine, CA, USA.
Li LiangDivision of Infectious Diseases, Department of Medicine, University of California Irvine, Irvine, CA, USA.

Funding

University of California Health Participation in the National COVID Cohort Collaborative (N3C)UL1TR001414 · NCATS · UNIVERSITY OF CALIFORNIA-IRVINE · PI COOPER, DAN M, VILAIN, ERIC J. · 2015 to 2023
$35.1M
TransmissionU19AI089686 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI KAZURA, JAMES WALTER · 2010 to 2016
$9.9M
Predicting naturally acquired humoral immunity against malariaR01AI095916 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI FELGNER, PHILIP LOUIS · 2012 to 2016
$2.1M
NCATS NIH HHS UL1 TR001414NIAID NIH HHS R01 AI095916NIAID NIH HHS R01AI095916NIAID NIH HHS U19 AI089686NIAID NIH HHS U19AI089686
6 · The paper itself

Abstract

Organic fluorescent dyes are widely used for the visualization of bound antibody in a variety of immunofluorescence assays. However, the detection equipment is often expensive, fragile, and hard to deploy widely. Quantum dots (Qdot) are nanocrystals made of semiconductor materials that emit light at different wavelengths according to the size of the crystal, with increased brightness and stability. Here, we have evaluated a small benchtop "personal" optical imager (ArrayCAM) developed for quantification of protein arrays probed by Qdot-based indirect immunofluorescence. The aim was to determine if the Qdot imager system provides equivalent data to the conventional organic dye-labeled antibody/laser scanner system. To do this, duplicate proteome microarrays of Vaccinia virus, Brucella melitensis and Plasmodium falciparum were probed with identical samples of immune sera, and IgG, IgA, and IgM profiles visualized using biotinylated secondary antibodies followed by a tertiary reagent of streptavidin coupled to either P3 (an organic cyanine dye typically used for microarrays) or Q800 (Qdot). The data show excellent correlation for all samples tested (R > 0.8) with no significant change of antibody reactivity profiles. We conclude that Qdot detection provides data equivalent to that obtained using conventional organic dye detection. The portable imager offers an economical, more robust, and deployable alternative to conventional laser array scanners.

Indexed as

Quantum DotsAntibodiesBrucella melitensisBrucellosisDiagnostic ImagingFluorescent Antibody Technique, IndirectFluorescent DyesHost-Pathogen InteractionsHumansImmunoglobulin AImmunoglobulin GImmunoglobulin MMalaria, FalciparumMicroscopy, ConfocalPlasmodium falciparumProtein Array AnalysisAntibodiesFluorescent DyesImmunoglobulin AImmunoglobulin GImmunoglobulin MAntibodyDiagnosticsProtein microarrayQuantum dots

Identifiers

PMID26842269
PMCPMC4973892

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.