Evidence map›Paper›PMID 26841765›Full record

ArticleActa crystallographica. Section F, Structural biology communications2016

Crystallographic observation of the movement of the membrane-distal domain of the T7SS core component EccB1 from Mycobacterium tuberculosis.

Xiao-Qian Xie, Xiao-Li Zhang, Chao Qi, De-Feng Li, Joy Fleming, Da-Cheng Wang, Li-Jun Bi

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 97% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Modeling Tubercular ESX-1 Secretion Using Mycobacterium marinum.Microbiology and molecular biology reviews : MMBR · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Xiao-Qian XieSchool of Life Science, Wenzhou Medical University, Wenzhou 325035, People's Republic of China.
Xiao-Li ZhangInstitute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China.
Chao QiInstitute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China.
De-Feng LiInstitute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China.
Joy FlemingInstitute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China.
Da-Cheng WangInstitute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China.
Li-Jun BiSchool of Life Science, Wenzhou Medical University, Wenzhou 325035, People's Republic of China.
Chinese Academy of Sciences · CNInstitute of Biophysics · CNWenzhou Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The protein EccB1, a core component of the type VII secretion system (T7SS) of Mycobacterium tuberculosis, has been identified as an ATPase and is essential for the secretion of virulence factors by the ESX-1 system. In a previous study, EccB1 structures were determined in two different conformations. Here, two new conformations are identified and described. These four conformations present snapshots of the swinging movement of the membrane-distal domain A2. The movement of this domain involves conformational changes in two flexible loops (loop A, residues 243-264, and loop B, residues 324-341) which are rich in proline and glycine residues and connect domain A2 to domains C1 and B2. It is proposed that the movement of this domain is related to the ATPase activity of EccB1 and its homologues, as well as to the substrate transport of ESX secretion systems.

Indexed as

Adenosine TriphosphatasesAmino Acid SequenceBacterial ProteinsBacterial Secretion SystemsCrystallizationCrystallography, X-RayMolecular Sequence DataMycobacterium tuberculosisProtein ConformationProtein Structure, TertiarySequence Homology, Amino AcidAdenosine TriphosphatasesBacterial ProteinsBacterial Secretion SystemsESX-1Mycobacterium tuberculosisRv3869type VII secretion system

Identifiers

PMID26841765
PMCPMC4741195
OpenAlexW2338560173

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.