ArticlePloS one2016
Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics.
Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- The Global Transcription Factor FvCon7 Plays a Role in the Morphology, FB1 Toxin Production, and Pathogenesis ofPlants (Basel, Switzerland) · 2025Article
- Repeat-induced point mutations driving Parastagonospora nodorum genomic diversity are balanced by selection against non-synonymous mutations.Communications biology · 2024Article
- Regulatory insight for a Zn2Cys6 transcription factor controlling effector-mediated virulence in a fungal pathogen of wheat.PLoS pathogens · 2024Article
- Manual correction of genome annotation improved alternative splicing identification of Artemisia annua.Planta · 2023Article
- Genetics and breeding for resistance against four leaf spot diseases in wheat (Frontiers in plant science · 2023Review
- A global pangenome for the wheat fungal pathogenMicrobial genomics · 2022Article
- Does Abiotic Host Stress Favour Dothideomycete-Induced Disease Development?Plants (Basel, Switzerland) · 2022Review
- Variability in an effector gene promoter of a necrotrophic fungal pathogen dictates epistasis and effector-triggered susceptibility in wheat.PLoS pathogens · 2022Article
- Review
- Gene Validation and Remodelling Using Proteogenomics ofFrontiers in microbiology · 2021Article
- Bioinformatic Detection of Positive Selection Pressure in Plant Pathogens: The Neutral Theory of Molecular Sequence Evolution in Action.Frontiers in microbiology · 2020Review
- A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat.Scientific reports · 2019Article
- Local adaptation drives the diversification of effectors in the fungal wheat pathogen Parastagonospora nodorum in the United States.PLoS genetics · 2019Article
- Small RNAs from the plant pathogenic fungus Sclerotinia sclerotiorum highlight host candidate genes associated with quantitative disease resistance.Molecular plant pathology · 2019Article
- Genetics of Variable Disease Expression Conferred by Inverse Gene-For-Gene Interactions in the Wheat-Plant physiology · 2019Article
- Apollo: Democratizing genome annotation.PLoS computational biology · 2019Article
- Low Amplitude Boom-and-Bust Cycles Define the Septoria Nodorum Blotch Interaction.Frontiers in plant science · 2019Article
- Collaborative Annotation Redefines Gene Sets for Crucial Phytopathogens.Frontiers in microbiology · 2019Article
- Pan-Parastagonospora Comparative Genome Analysis-Effector Prediction and Genome Evolution.Genome biology and evolution · 2018Article
- Comparative genomics of the wheat fungal pathogen Pyrenophora tritici-repentis reveals chromosomal variations and genome plasticity.BMC genomics · 2018Article
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Authors and funding
13 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Parastagonospora nodorum, the causal agent of Septoria nodorum blotch (SNB), is an economically important pathogen of wheat (Triticum spp.), and a model for the study of necrotrophic pathology and genome evolution. The reference P. nodorum strain SN15 was the first Dothideomycete with a published genome sequence, and has been used as the basis for comparison within and between species. Here we present an updated reference genome assembly with corrections of SNP and indel errors in the underlying genome assembly from deep resequencing data as well as extensive manual annotation of gene models using transcriptomic and proteomic sources of evidence (https://github.com/robsyme/Parastagonospora_nodorum_SN15). The updated assembly and annotation includes 8,366 genes with modified protein sequence and 866 new genes. This study shows the benefits of using a wide variety of experimental methods allied to expert curation to generate a reliable set of gene models.
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