Evidence map›Paper›PMID 26839287›Full record

ArticleeLife2016

PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis.

He Huang, Chan Yul Yoo, Rebecca Bindbeutel, Jessica Goldsworthy, Allison Tielking, Sophie Alvarez, Michael J Naldrett, Bradley S Evans, Meng Chen, Dmitri A Nusinow

Abstract read
In one paragraph

Article in eLife, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed.

  1. Review
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  13. Overexpression ofBiomolecules · 2024
    Article
  14. Characterization of Thermoresponsive Photobody Dynamics.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  15. Article
  16. Article
  17. International journal of molecular sciences · 2023
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

He HuangDonald Danforth Plant Science Center, St. Louis, United States.ORCID http://orcid.org/0000-0002-4564-7604
Chan Yul YooDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California at Riverside, Riverside, United States.ORCID http://orcid.org/0000-0001-6159-7443
Rebecca BindbeutelDonald Danforth Plant Science Center, St. Louis, United States.ORCID http://orcid.org/0000-0001-7994-2073
Jessica GoldsworthyMichigan State University, East Lansing, United States.
Allison TielkingMary Institute and Saint Louis Country Day School, St. Louis, United States.
Sophie AlvarezDonald Danforth Plant Science Center, St. Louis, United States.ORCID http://orcid.org/0000-0001-8550-2832
Michael J NaldrettDonald Danforth Plant Science Center, St. Louis, United States.ORCID http://orcid.org/0000-0002-6899-5652
Bradley S EvansDonald Danforth Plant Science Center, St. Louis, United States.ORCID http://orcid.org/0000-0002-1207-9006
Meng ChenDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California at Riverside, Riverside, United States.
Dmitri A NusinowDonald Danforth Plant Science Center, St. Louis, United States.ORCID http://orcid.org/0000-0002-0497-1723

Funding

Genetic Characterization of Phytochrome Nuclear Bodies in Plant Light SignalingR01GM087388 · NIGMS · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHEN, MENG · 2010 to 2023
$5.8M
NIGMS NIH HHS R01 GM087388
6 · The paper itself

Abstract

Plants react to seasonal change in day length through altering physiology and development. Factors that function to harmonize growth with photoperiod are poorly understood. Here we characterize a new protein that associates with both circadian clock and photoreceptor components, named PHOTOPERIODIC CONTROL OF HYPOCOTYL1 (PCH1). pch1 seedlings have overly elongated hypocotyls specifically under short days while constitutive expression of PCH1 shortens hypocotyls independent of day length. PCH1 peaks at dusk, binds phytochrome B (phyB) in a red light-dependent manner, and co-localizes with phyB into photobodies. PCH1 is necessary and sufficient to promote the biogenesis of large photobodies to maintain an active phyB pool after light exposure, potentiating red-light signaling and prolonging memory of prior illumination. Manipulating PCH1 alters PHYTOCHROME INTERACTING FACTOR 4 levels and regulates light-responsive gene expression. Thus, PCH1 is a new factor that regulates photoperiod-responsive growth by integrating the clock with light perception pathways through modulating daily phyB-signaling.

Indexed as

Circadian ClocksLightPhotoperiodPlant DevelopmentSignal TransductionArabidopsisArabidopsis ProteinsGene ExpressionGene Expression Regulation, PlantGene Knockout TechniquesMetallochaperonesPhytochrome BArabidopsis ProteinsMetallochaperonesPCH1 protein, ArabidopsisPHYB protein, ArabidopsisPhytochrome Bcircadian rhythm<i>a. thaliana</i>photobodyphotoperiodismphytochromeplant biologyplant growthsignal transduction

Identifiers

PMID26839287
PMCPMC4755757

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.