ArticleG3 (Bethesda, Md.)2016
Utilizing Gene Tree Variation to Identify Candidate Effector Genes in Zymoseptoria tritici.
Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed.
- "Correcting" Gene Trees to be More Like Species Trees Frequently Increases Topological Error.Genome biology and evolution · 2023Article
- Fungal plant pathogen "mutagenomics" reveals tagged and untagged mutations inFrontiers in plant science · 2023Article
- The identification of a transposon affecting the asexual reproduction of the wheat pathogen Zymoseptoria tritici.Molecular plant pathology · 2021Article
- Recent loss of the Dim2 DNA methyltransferase decreases mutation rate in repeats and changes evolutionary trajectory in a fungal pathogen.PLoS genetics · 2021Article
- Interspecific Gene Exchange Introduces High Genetic Variability in Crop Pathogen.Genome biology and evolution · 2019Article
- Rapid Parallel Evolution of Azole Fungicide Resistance in Australian Populations of the Wheat PathogenApplied and environmental microbiology · 2019Article
- Highly flexible infection programs in a specialized wheat pathogen.Ecology and evolution · 2019Article
- Extraordinary Genome Instability and Widespread Chromosome Rearrangements During Vegetative Growth.Genetics · 2018Article
- Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome.BMC biology · 2018Article
- Distinct Trajectories of Massive Recent Gene Gains and Losses in Populations of a Microbial Eukaryotic Pathogen.Molecular biology and evolution · 2017Article
- Origin and Spread of Spliceosomal Introns: Insights from the Fungal Clade Zymoseptoria.Genome biology and evolution · 2017Article
- A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements.The ISME journal · 2017Article
- Rapid emergence of pathogens in agro-ecosystems: global threats to agricultural sustainability and food security.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016Review
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Zymoseptoria tritici is a host-specific, necrotrophic pathogen of wheat. Infection by Z. tritici is characterized by its extended latent period, which typically lasts 2 wks, and is followed by extensive host cell death, and rapid proliferation of fungal biomass. This work characterizes the level of genomic variation in 13 isolates, for which we have measured virulence on 11 wheat cultivars with differential resistance genes. Between the reference isolate, IPO323, and the 13 Australian isolates we identified over 800,000 single nucleotide polymorphisms, of which ∼10% had an effect on the coding regions of the genome. Furthermore, we identified over 1700 probable presence/absence polymorphisms in genes across the Australian isolates using de novo assembly. Finally, we developed a gene tree sorting method that quickly identifies groups of isolates within a single gene alignment whose sequence haplotypes correspond with virulence scores on a single wheat cultivar. Using this method, we have identified < 100 candidate effector genes whose gene sequence correlates with virulence toward a wheat cultivar carrying a major resistance gene.
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