Evidence map›Paper›PMID 26837754›Full record

ArticleGenetics2016

Chromosome-Specific and Global Effects of Aneuploidy in Saccharomyces cerevisiae.

Stacie E Dodgson, Sharon Kim, Michael Costanzo, Anastasia Baryshnikova, Darcy L Morse, Chris A Kaiser, Charles Boone, Angelika Amon

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
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  7. PCAT19: the role in cancer pathogenesis and beyond.Frontiers in cell and developmental biology · 2024
    Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. Fungal evolution: cellular, genomic and metabolic complexity.Biological reviews of the Cambridge Philosophical Society · 2020
    Article
  13. The environmental stress response causes ribosome loss in aneuploid yeast cells.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Aneuploidization under segmental allotetraploidy in rice and its phenotypic manifestation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Stacie E DodgsonKoch Institute for Integrative Cancer Research, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142 Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142.ORCID http://orcid.org/0000-0002-3129-8853
Sharon KimKoch Institute for Integrative Cancer Research, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142 Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142.
Michael CostanzoThe Donnelly Centre, University of Toronto, Toronto, Ontario M5S3E1, Canada Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S3E1, Canada.
Anastasia BaryshnikovaLewis-Sigler Institute for Integrative Genomics, Princeton University, New Jersey 08544-1014.
Darcy L MorseDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142.
Chris A KaiserDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142.
Charles BooneThe Donnelly Centre, University of Toronto, Toronto, Ontario M5S3E1, Canada Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S3E1, Canada.
Angelika AmonKoch Institute for Integrative Cancer Research, Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142 Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts 02142 angelika@mit.edu.
Massachusetts Institute of Technology · USUniversity of Toronto · CAHoward Hughes Medical Institute · USPrinceton University · US

Funding

Mapping the reference genetic network of a eukaryotic cellR01HG005853 · NHGRI · UNIVERSITY OF TORONTO · PI ANDREWS, BRENDA JEAN, BOONE, CHARLES · 2010 to 2025
$7.6M
Regulation of Mitosis by Proteolysis in YeastR01GM056800 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI AMON, ANGELIKA B · 2004 to 2015
$3.4M
Causes and consequences of aneuploidyR35GM118066 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI AMON, ANGELIKA B · 2016 to 2020
$1.9M
Regulation of mitosis by proteolysis in yeastR01CA206157 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI AMON, ANGELIKA B · 2016 to 2020
$1.4M
REGULATION OF MITOSIS BY PROTEOLYSIS IN YEASTR29GM056800 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI AMON, ANGELIKA B · 1997 to 2003
$738k
Canadian Institutes of Health ResearchHoward Hughes Medical InstituteNCI NIH HHS R01 CA206157NHGRI NIH HHS R01 HG005853NHGRI NIH HHS R01HG005853NIGMS NIH HHS GM056800NIGMS NIH HHS R01 GM056800NIGMS NIH HHS R29 GM056800NIGMS NIH HHS R35 GM118066
6 · The paper itself

Abstract

Aneuploidy, an unbalanced karyotype in which one or more chromosomes are present in excess or reduced copy number, causes an array of known phenotypes including proteotoxicity, genomic instability, and slowed proliferation. However, the molecular consequences of aneuploidy are poorly understood and an unbiased investigation into aneuploid cell biology is lacking. We performed high-throughput screens for genes the deletion of which has a synthetic fitness cost in aneuploidy Saccharomyces cerevisiae cells containing single extra chromosomes. This analysis identified genes that, when deleted, decrease the fitness of specific disomic strains as well as those that impair the proliferation of a broad range of aneuploidies. In one case, a chromosome-specific synthetic growth defect could be explained fully by the specific duplication of a single gene on the aneuploid chromosome, highlighting the ability of individual dosage imbalances to cause chromosome-specific phenotypes in aneuploid cells. Deletion of other genes, particularly those involved in protein transport, however, confers synthetic sickness on a broad array of aneuploid strains. Indeed, aneuploid cells, regardless of karyotype, exhibit protein secretion and cell-wall integrity defects. Thus, we were able to use this screen to identify novel cellular consequences of aneuploidy, dependent on both specific chromosome imbalances and caused by many different aneuploid karyotypes. Interestingly, the vast majority of cancer cells are highly aneuploid, so this approach could be of further use in identifying both karyotype-specific and nonspecific stresses exhibited by cancer cells as potential targets for the development of novel cancer therapeutics.

Indexed as

AneuploidyChromosomes, FungalGene DeletionGene DosageGene Expression ProfilingGenetic FitnessKaryotypeProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSynthetic Lethal MutationsSaccharomyces cerevisiae Proteinsaneuploidydosage imbalanceprotein transportsynthetic lethality

Identifiers

PMID26837754
PMCPMC4905547
OpenAlexW2258936965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.