Evidence map›Paper›PMID 26837574›Full record

ArticleNucleic acids research2016

G-quadruplex-interacting compounds alter latent DNA replication and episomal persistence of KSHV.

Advaitha Madireddy, Pravinkumar Purushothaman, Christopher P Loosbroock, Erle S Robertson, Carl L Schildkraut, Subhash C Verma

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 85 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Advaitha MadireddyDepartment of Cell Biology, Albert Einstein College of Medicine, 1300 Morris Park Ave, Ch416, Bronx, NY 10461, USA.
Pravinkumar PurushothamanDepartment of Microbiology and Immunology, School of Medicine, University of Nevada, Reno, 1664 N Virginia Street, MS 320, Reno, NV 89557, USA.
Christopher P LoosbroockDepartment of Microbiology and Immunology, School of Medicine, University of Nevada, Reno, 1664 N Virginia Street, MS 320, Reno, NV 89557, USA.
Erle S RobertsonDepartment of Microbiology and the Tumor Virology Program of the Abramson Cancer Center, Perelman School of Medicine at the University of Pennsylvania, 201E Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA.
Carl L SchildkrautDepartment of Cell Biology, Albert Einstein College of Medicine, 1300 Morris Park Ave, Ch416, Bronx, NY 10461, USA carl.schildkraut@einstein.yu.edu.
Subhash C VermaDepartment of Microbiology and Immunology, School of Medicine, University of Nevada, Reno, 1664 N Virginia Street, MS 320, Reno, NV 89557, USA scverma@medicine.nevada.edu.
University of Nevada, Reno · USAlbert Einstein College of Medicine · USAbramson Cancer Center

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI THOMAS E ROHAN · 1985 to 2026
$111.2M
Immunology/Pathology CoreP30AI051519 · NIAID · YESHIVA UNIVERSITY · PI GOLDSTEIN, HARRIS · 2003 to 2013
$18.6M
DNA REPLICATION INITIATION SITES IN MAMMALIAN CELLSR01GM045751 · NIGMS · YESHIVA UNIVERSITY · PI SCHILDKRAUT, CARL L · 1992 to 2023
$13.4M
Role of LANA-RBP-jk During Early KSHV InfectionP01CA174439 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ROBERTSON, ERLE S. · 2013 to 2018
$8.7M
KSHV Lytic DNA Replication and its Control MechanismR01AI105000 · NIAID · UNIVERSITY OF NEVADA RENO · PI VERMA, SUBHASH C · 2013 to 2017
$1.8M
Genome Persistence of KSHVR01CA171979 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ROBERTSON, ERLE S. · 2013 to 2017
$1.5M
KSHV Genome Replication during Primary InfectionR01CA174459 · NCI · UNIVERSITY OF NEVADA RENO · PI VERMA, SUBHASH C · 2013 to 2017
$1.5M
KSHV genome modification in KS tissueR01CA177423 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ROBERTSON, ERLE S. · 2013 to 2015
$594k
NCI NIH HHS P01 CA174439NCI NIH HHS P30 CA013330NCI NIH HHS R01 CA171979NCI NIH HHS R01 CA174459NCI NIH HHS R01 CA177423NIAID NIH HHS P30 AI051519NIAID NIH HHS R01 AI105000NIGMS NIH HHS R01 GM045751
6 · The paper itself

Abstract

Kaposi's sarcoma associated herpesvirus (KSHV) establishes life-long latent infection by persisting as an extra-chromosomal episome in the infected cells and by maintaining its genome in dividing cells. KSHV achieves this by tethering its epigenome to the host chromosome by latency associated nuclear antigen (LANA), which binds in the terminal repeat (TR) region of the viral genome. Sequence analysis of the TR, a GC-rich DNA element, identified several potential Quadruplex G-Rich Sequences (QGRS). Since quadruplexes have the tendency to obstruct DNA replication, we used G-quadruplex stabilizing compounds to examine their effect on latent DNA replication and the persistence of viral episomes. Our results showed that these G-quadruplex stabilizing compounds led to the activation of dormant origins of DNA replication, with preferential bi-directional pausing of replications forks moving out of the TR region, implicating the role of the G-rich TR in the perturbation of episomal DNA replication. Over time, treatment with PhenDC3 showed a loss of viral episomes in the infected cells. Overall, these data show that G-quadruplex stabilizing compounds retard the progression of replication forks leading to a reduction in DNA replication and episomal maintenance. These results suggest a potential role for G-quadruplex stabilizers in the treatment of KSHV-associated diseases.

Indexed as

Cell LineDNA ReplicationGenome, ViralG-QuadruplexesHEK293 CellsHerpesvirus 8, HumanHumansPlasmidsPorphyrinsReplication OriginTerminal Repeat SequencesVirus LatencyPorphyrinstetra(4-N-methylpyridyl)porphine

Identifiers

PMID26837574
PMCPMC4856979
OpenAlexW2263606767

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.