Evidence map›Paper›PMID 26835489›Full record

ArticleJournal of medical imaging (Bellingham, Wash.)2015

Developing a utility decision framework to evaluate predictive models in breast cancer risk estimation.

Yirong Wu, Craig K Abbey, Xianqiao Chen, Jie Liu, David C Page, Oguzhan Alagoz, Peggy Peissig, Adedayo A Onitilo, Elizabeth S Burnside

Abstract read
In one paragraph

Article in Journal of medical imaging (Bellingham, Wash.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. A Utility/Cost Analysis of Breast Cancer Risk Prediction Algorithms.Proceedings of SPIE--the International Society for Optical Engineering · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yirong WuUniversity of Wisconsin-Madison , Department of Radiology, 600 Highland Avenue, Madison, Wisconsin 53792, United States.
Craig K AbbeyUniversity of California-Santa Barbara , Department of Psychological and Brain Sciences, 251 UCEN Road, Santa Barbara, California 93106, United States.
Xianqiao ChenWuhan University of Technology , School of Computer Science and Technology, 1178 Heping Avenue, Wuhan, Hubei 430070, China.
Jie LiuUniversity of Washington-Seattle , Department of Genome Sciences, 3720 15th Avenue, Seattle, Washington 98105, United States.
David C PageUniversity of Wisconsin-Madison , Department of Biostatistics and Medical Informatics, 600 Highland Avenue, Madison, Wisconsin 53706, United States.
Oguzhan AlagozUniversity of Wisconsin-Madison , Department of Industrial and Systems Engineering, 1513 University Avenue, Madison, Wisconsin 53706, United States.
Peggy PeissigMarshfield Clinic Research Foundation , 1000 North Oak Avenue, Marshfield, Wisconsin 54449, United States.
Adedayo A OnitiloMarshfield Clinic Research Foundation, 1000 North Oak Avenue, Marshfield, Wisconsin 54449, United States; Marshfield Clinic Weston Center, Department of Hematology/Oncology, 3501 Cranberry Boulevard, Weston, Wisconsin 54476, United States.
Elizabeth S BurnsideUniversity of Wisconsin-Madison , Department of Radiology, 600 Highland Avenue, Madison, Wisconsin 53792, United States.

Funding

TrainingU54AI117924 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI CRAVEN, MARK W. · 2014 to 2018
$11.3M
Machine Learning for Identifying Adverse Drug EventsR01GM097618 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI CALDWELL, MICHAEL DEFOIX, HANSEN, RICHARD A. · 2011 to 2018
$3.8M
Secure Sharing of Clinical History & Genetic Data: Empowering Predictive Pers. MeR01LM011028 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI PAGE, CHARLES DAVID · 2011 to 2014
$2.2M
Breast Cancer GWAS: Function and Environmental InteractionsR01ES017400 · NIEHS · UNIVERSITY OF WISCONSIN-MADISON · PI GOULD, MICHAEL N, NEWTON, MICHAEL A · 2009 to 2013
$2.1M
Machine Learning for Improved Mammography ScreeningR01CA127379 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI BURNSIDE, ELIZABETH S · 2007 to 2010
$1.4M
Utility-Based Assessment of Diagnostic Imaging PerformanceR21EB018939 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI ABBEY, CRAIG KENDALL · 2014 to 2015
$384k
NCI NIH HHS R01 CA127379NIAID NIH HHS U54 AI117924NIEHS NIH HHS R01 ES017400NIGMS NIH HHS R01 GM097618NLM NIH HHS R01 LM011028
6 · The paper itself

Abstract

Combining imaging and genetic information to predict disease presence and progression is being codified into an emerging discipline called "radiogenomics." Optimal evaluation methodologies for radiogenomics have not been well established. We aim to develop a decision framework based on utility analysis to assess predictive models for breast cancer diagnosis. We garnered Gail risk factors, single nucleotide polymorphisms (SNPs), and mammographic features from a retrospective case-control study. We constructed three logistic regression models built on different sets of predictive features: (1) Gail, (2) Gail + Mammo, and (3) Gail + Mammo + SNP. Then we generated receiver operating characteristic (ROC) curves for three models. After we assigned utility values for each category of outcomes (true negatives, false positives, false negatives, and true positives), we pursued optimal operating points on ROC curves to achieve maximum expected utility of breast cancer diagnosis. We performed McNemar's test based on threshold levels at optimal operating points, and found that SNPs and mammographic features played a significant role in breast cancer risk estimation. Our study comprising utility analysis and McNemar's test provides a decision framework to evaluate predictive models in breast cancer risk estimation.

Indexed as

breast imagingexpected utilitygenomicsmammographyreceiver operating characteristic methodology

Identifiers

PMID26835489
PMCPMC4718446

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.