Evidence map›Paper›PMID 26834783›Full record

ArticleEURASIP journal on bioinformatics & systems biology2016

Precise periodic components estimation for chronobiological signals through Bayesian Inference with sparsity enforcing prior.

Mircea Dumitru, Ali Mohammad-Djafari, Simona Baghai Sain

Open access · hybridAbstract read
In one paragraph

Article in EURASIP journal on bioinformatics & systems biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 10 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Mircea DumitruLaboratoire des signaux et systèmes (L2S), UMR 8506 CNRS-CentraleSupélec-Univ. Paris-Sud, CentraleSupélec, Plateau de Moulon, Gif-sur-Yvette, 91192 France ; Rythmes Biologiques et Cancers (RBC), UMR 776 INSERM-Univ. Paris-Sud, Campus CNRS, Villejuif, 94801 France.
Ali Mohammad-DjafariLaboratoire des signaux et systèmes (L2S), UMR 8506 CNRS-CentraleSupélec-Univ. Paris-Sud, CentraleSupélec, Plateau de Moulon, Gif-sur-Yvette, 91192 France.
Simona Baghai SainLaboratoire des signaux et systèmes (L2S), UMR 8506 CNRS-CentraleSupélec-Univ. Paris-Sud, CentraleSupélec, Plateau de Moulon, Gif-sur-Yvette, 91192 France ; Department of Molecular Biotechnology and Health Sciences, University of Turin, Turin, 10126 Italy.
CentraleSupélec · FRCentre National de la Recherche Scientifique · FRUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The toxicity and efficacy of more than 30 anticancer agents present very high variations, depending on the dosing time. Therefore, the biologists studying the circadian rhythm require a very precise method for estimating the periodic component (PC) vector of chronobiological signals. Moreover, in recent developments, not only the dominant period or the PC vector present a crucial interest but also their stability or variability. In cancer treatment experiments, the recorded signals corresponding to different phases of treatment are short, from 7 days for the synchronization segment to 2 or 3 days for the after-treatment segment. When studying the stability of the dominant period, we have to consider very short length signals relative to the prior knowledge of the dominant period, placed in the circadian domain. The classical approaches, based on Fourier transform (FT) methods are inefficient (i.e., lack of precision) considering the particularities of the data (i.e., the short length). Another particularity of the signals considered in such experiments is the level of noise: such signals are very noisy and establishing the periodic components that are associated with the biological phenomena and distinguishing them from the ones associated with the noise are difficult tasks. In this paper, we propose a new method for the estimation of the PC vector of biomedical signals, using the biological prior informations and considering a model that accounts for the noise. The experiments developed in cancer treatment context are recording signals expressing a limited number of periods. This is a prior information that can be translated as the sparsity of the PC vector. The proposed method considers the PC vector estimation as an Inverse Problem (IP) using the general Bayesian inference in order to infer the unknown of our model, i.e. the PC vector but also the hyperparameters (i.e the variances). The sparsity prior information is modeled using a sparsity enforcing prior law. In this paper, we propose a Student's

Indexed as

Bayesian parameter estimationCancer treatmentChronobiologyCircadian rhythmInfinite Gaussian scale mixture (IGSM)Inverse problemJoint maximum a posteriori (JMAP)Kullback-Leibler (KL) divergenceNormal-inverse gammaPeriodic component (PC) vector estimationPosterior mean (PM)Sparsity enforcingVariational Bayesian approximation (VBA)

Identifiers

PMID26834783
PMCPMC4720710
OpenAlexW2294150140

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.