Evidence map›Paper›PMID 26833566›Full record

ArticleThe Journal of biological chemistry2016

Structural Basis for Sialoglycan Binding by the Streptococcus sanguinis SrpA Adhesin.

Barbara A Bensing, Lioudmila V Loukachevitch, Kathryn M McCulloch, Hai Yu, Kendra R Vann, Zdzislaw Wawrzak, Spencer Anderson, Xi Chen, Paul M Sullam, T M Iverson

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Crystal structure of the long Rib domain of the LPXTG-anchored surface protein from Limosilactobacillus reuteri.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Frontiers in cellular and infection microbiology · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Tandem sialoglycan-binding modules in aThe Journal of biological chemistry · 2020
    Article
  13. Article
  14. Article
  15. Association of NovelFrontiers in microbiology · 2020
    Article
  16. Review
  17. Streptococcus oralis subsp.Infection and immunity · 2019
    Article
  18. Article
  19. Comparative Genomic Analysis ofFrontiers in microbiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Barbara A BensingFrom the Division of Infectious Diseases, Veterans Affairs Medical Center, Department of Medicine, University of California, San Francisco and the Northern California Institute for Research and Education, San Francisco, California 94121.
Lioudmila V Loukachevitchthe Departments of Pharmacology and.
Kathryn M McCullochthe Departments of Pharmacology and.
Hai Yuthe Department of Chemistry, University of California, Davis, California 95616, and.
Kendra R VannBiochemistry.
Zdzislaw WawrzakLife Sciences Collaborative Access Team, Synchrotron Research Center, Northwestern University, Argonne, Illinois 60439.
Spencer AndersonLife Sciences Collaborative Access Team, Synchrotron Research Center, Northwestern University, Argonne, Illinois 60439.
Xi Chenthe Department of Chemistry, University of California, Davis, California 95616, and.
Paul M SullamFrom the Division of Infectious Diseases, Veterans Affairs Medical Center, Department of Medicine, University of California, San Francisco and the Northern California Institute for Research and Education, San Francisco, California 94121.
T M Iversonthe Departments of Pharmacology and Biochemistry, Center for Structural Biology, and Vanderbilt Institute of Chemical Biology, Vanderbilt University, Nashville, Tennessee 37232, tina.iverson@vanderbilt.edu.
Vanderbilt University · USNorthwestern University · USUniversity of California, Davis · USNorthern California Institute for Research and Education · USUniversity of California, San Francisco · US

Funding

Vanderbilt/Meharry Initiative for Minority Student DvptR25GM062459 · NIGMS · VANDERBILT UNIVERSITY · PI VELEZ EDWARDS, DIGNA R · 2002 to 2020
$10.4M
MOLECULAR BIOPHYSICS TRAINING PROGRAM AT VANDERBILTT32GM008320 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 1989 to 2023
$7.9M
TRAINING GRANT IN MECHANISMS OF VASCULAR DISEASET32HL007751 · NHLBI · VANDERBILT UNIVERSITY · PI BOCK, PAUL E · 1994 to 2014
$6.6M
STREPTOCOCCAL PLATELET BINDING AND ENDOCARDITISR01AI041513 · NIAID · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI SULLAM, PAUL M. · 1997 to 2019
$5.6M
Mechanisms for ligand binding by serine-rich adhesins of Gram-positive pathogensR01AI106987 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI IVERSON, T M, SULLAM, PAUL M. · 2014 to 2018
$3.4M
MINING THE ORAL MICROBIOME FOR NOVEL GLYCAN-BINDING MOLECULESR21DE025826 · NIDCR · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI RUHL, STEFAN HANS-KLAUS, SULLAM, PAUL M. · 2015 to 2016
$638k
Crystallographic AutomationS10RR026915 · NCRR · VANDERBILT UNIVERSITY · PI IVERSON, T M · 2010 to 2010
$490k
NCRR NIH HHS S10 RR026915NHLBI NIH HHS T32 HL007751NIAID NIH HHS AI106987NIAID NIH HHS AI41513NIAID NIH HHS R01 AI041513NIAID NIH HHS R01 AI106987NIDCR NIH HHS R21 DE025826NIGMS NIH HHS R25 GM062459NIGMS NIH HHS T32 GM008320NIGMS NIH HHS T32GM008320
6 · The paper itself

Abstract

Streptococcus sanguinisis a leading cause of infective endocarditis, a life-threatening infection of the cardiovascular system. An important interaction in the pathogenesis of infective endocarditis is attachment of the organisms to host platelets.S. sanguinisexpresses a serine-rich repeat adhesin, SrpA, similar in sequence to platelet-binding adhesins associated with increased virulence in this disease. In this study, we determined the first crystal structure of the putative binding region of SrpA (SrpABR) both unliganded and in complex with a synthetic disaccharide ligand at 1.8 and 2.0 Å resolution, respectively. We identified a conserved Thr-Arg motif that orients the sialic acid moiety and is required for binding to platelet monolayers. Furthermore, we propose that sequence insertions in closely related family members contribute to the modulation of structural and functional properties, including the quaternary structure, the tertiary structure, and the ligand-binding site.

Indexed as

Adhesins, BacterialBinding SitesBlood PlateletsEndocarditisHumansN-Acetylneuraminic AcidStreptococcal InfectionsStreptococcusVirulence FactorsAdhesins, BacterialN-Acetylneuraminic AcidVirulence Factorsadhesinbacterial adhesionbacterial pathogenesiscarbohydrate-binding proteincrystal structureimmunoglobulin-like domainlectinsialic acidStreptococcus

Identifiers

PMID26833566
PMCPMC4817157
OpenAlexW2272772088

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.