Evidence map›Paper›PMID 26833403›Full record

ArticleScientific reports2016

Transcriptome analysis of Glomus mosseae/Medicago sativa mycorrhiza on atrazine stress.

Fuqiang Song, Jize Li, Xiaoxu Fan, Quan Zhang, Wei Chang, Fengshan Yang, Gui Geng

Abstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. The Effects ofPlants (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Fuqiang SongBio-ecological Restoration, School of Life Science, Heilongjiang University, Harbin, 74 Xuefu Road Heilongjiang 150080, China.
Jize LiBio-ecological Restoration, School of Life Science, Heilongjiang University, Harbin, 74 Xuefu Road Heilongjiang 150080, China.
Xiaoxu FanBio-ecological Restoration, School of Life Science, Heilongjiang University, Harbin, 74 Xuefu Road Heilongjiang 150080, China.
Quan ZhangDepartment of Biology, Washington University at St Louis, Saint Louis, 1 Brookings Drive MO 63130, USA.
Wei ChangBio-ecological Restoration, School of Life Science, Heilongjiang University, Harbin, 74 Xuefu Road Heilongjiang 150080, China.
Fengshan YangBio-ecological Restoration, School of Life Science, Heilongjiang University, Harbin, 74 Xuefu Road Heilongjiang 150080, China.
Gui GengBio-ecological Restoration, School of Life Science, Heilongjiang University, Harbin, 74 Xuefu Road Heilongjiang 150080, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arbuscular mycorrhizal fungi (AMF) protect host plants against diverse biotic and abiotic stresses, and promote biodegradation of various contaminants. In this study effect of Glomus mosseae/Medicago sativa mycorrhiza on atrazine degradation was investigated. It was observed that the atrazine degradation rates with any addition level in mycorrhizal treatments were all significantly higher than those in non-mycorrhizal treatments. When atrazine was applied at 20 mg kg(-1), the removal efficiency was up to 74.65%. Therefore, G. mosseae can be considered as ideal inhabitants of technical installations to facilitate phytoremediation. Furthermore, a total of 10.4 Gb was used for de novo transcriptome assembly, resulting in a comprehensive data set for the identification of genes corresponding to atrazine stress in the AM association. After comparative analysis with edgeR, a total of 2,060 differential expressed genes were identified, including 570 up-regulated genes and 1490 down-regulated genes. After excluding 'function unknown' and 'general function predictions only' genes, 172 up-regulated genes were obtained. The differentially expressed genes in AM association with and without atrazine stress were associated with molecular processes/other proteins, zinc finger protein, intracellular/extracellular enzymes, structural proteins, anti-stress/anti-disease protein, electron transport-related protein, and plant growth associated protein. Our results not only prove AMF has important ecological significance on atrazine degradation but also provide evidence for the molecular mechanisms of atrazine degradation by AMF.

Indexed as

Gene Expression ProfilingGlomeromycotaMycorrhizaeAtrazineComputational BiologyGene Expression Regulation, PlantGene OntologyHerbicidesMedicago sativaMolecular Sequence AnnotationPlant RootsReproducibility of ResultsStress, PhysiologicalTranscriptomeAtrazineHerbicides

Identifiers

PMID26833403
PMCPMC4735738

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.