Evidence map›Paper›PMID 26833332›Full record

ArticleAmerican journal of human genetics2016

CCDC115 Deficiency Causes a Disorder of Golgi Homeostasis with Abnormal Protein Glycosylation.

Jos C Jansen, Sebahattin Cirak, Monique van Scherpenzeel, Sharita Timal, Janine Reunert, Stephan Rust, Belén Pérez, Dorothée Vicogne, Peter Krawitz, Yoshinao Wada and 33 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 2 pooled it
11.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 2 syntheses or guidelines pooled it, 98 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Oxr1 and Ncoa7 regulate V-ATPase to achieve optimal pH for glycosylation within the Golgi apparatus and trans-Golgi network.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  7. Emerging role of lipophagy in liver disorders.Molecular and cellular biochemistry · 2024
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  9. Whole-genome sequencing and genomic analysis of Norduz goat (Capra hircus).Mammalian genome : official journal of the International Mammalian Genome Society · 2023
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  11. Admixture Mapping in African Americans Identifies New Risk Loci for HCV-Related Cirrhosis.Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association · 2023
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  12. Article
  13. Structural basis of V-ATPase VProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 17 institutions in 8 countries.

Jos C JansenDepartment of Gastroenterology and Hepatology, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Translational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Sebahattin CirakInstitut für Humangenetik, Uniklinik Köln, 50931 Köln, Germany; Klinik und Poliklinik für Kinder- und Jugendmedizin, Uniklinik Köln, 50937 Köln, Germany; Zentrum für Molekulare Medizin, Uniklinik Köln, 50931 Köln, Germany.
Monique van ScherpenzeelTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Sharita TimalTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Janine ReunertDepartment of Pediatrics, Westfälische Wilhelms-Universität Münster, 48149 Münster, Germany.
Stephan RustDepartment of Pediatrics, Westfälische Wilhelms-Universität Münster, 48149 Münster, Germany.
Belén PérezCentro de Diagnóstico de Enfermedades Moleculares, Centro de Biología Molecular Severo Ochoa UAM-CSIC, Universidad Autónoma de Madrid, Campus de Cantoblanco and Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER) and Instituto de Investigación Sanitaria (IdiPAZ), 28049 Madrid, Spain.
Dorothée VicogneCNRS-UMR 8576, Structural and Functional Glycobiology Unit, Federation of Research Structural & Functional Biochemistry of Biomolecular Assemblies (FRABio), University of Lille, 59655 Villeneuve d'Ascq, France.
Peter KrawitzInstitute for Medical Genetics, 13353 Berlin, Germany.
Yoshinao WadaOsaka Medical Center and Research Institute for Maternal and Child Health, Izumi, Osaka 594-1101, Japan.
Angel AshikovTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Celia Pérez-CerdáCentro de Diagnóstico de Enfermedades Moleculares, Centro de Biología Molecular Severo Ochoa UAM-CSIC, Universidad Autónoma de Madrid, Campus de Cantoblanco and Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER) and Instituto de Investigación Sanitaria (IdiPAZ), 28049 Madrid, Spain.
Celia MedranoCentro de Diagnóstico de Enfermedades Moleculares, Centro de Biología Molecular Severo Ochoa UAM-CSIC, Universidad Autónoma de Madrid, Campus de Cantoblanco and Centro de Investigación Biomédica en Red de Enfermedades Raras (CIBERER) and Instituto de Investigación Sanitaria (IdiPAZ), 28049 Madrid, Spain.
Andrea ArnoldyDepartment of Pediatrics, University of Essen, 45122 Essen, Germany.
Alexander HoischenDepartment of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Karin HuijbenTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Gerry SteenbergenTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Dulce QuelhasBiochemical Genetics Unit, Centro de Genética Médica Jacinto de Magalhães, Centro Hospitalar do Porto, 4050-466 Porto, Portugal.
Luisa DiogoMetabolic Diseases Unit, Centro de Desenvolvimento da Criança, Hospital Pediátrico, Centro Hospitalar Universitário de Coimbra, 3000-609 Coimbra, Portugal.
Daisy RymenDepartment of Pediatrics, University of Leuven, 3000 Leuven, Belgium.
Jaak JaekenDepartment of Pediatrics, University of Leuven, 3000 Leuven, Belgium.
Nathalie GuffonCentre de Référence des Maladies Héréditaires du Métabolisme, Hôpital Femme Mère Enfant, 69677 Bron Cedex, France.
David CheillanCentre de Référence des Maladies Héréditaires du Métabolisme, Hôpital Femme Mère Enfant, 69677 Bron Cedex, France.
Lambertus P van den HeuvelTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Nijmegen Center for Mitochondrial Disorders, Translational Metabolic Laboratory, Department of Pediatrics, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Yusuke MaedaResearch Institute for Microbial Diseases, Osaka University, Suita, Osaka 565-0871, Japan.
Olaf KaiserDepartment of Pediatric Neurology, Children's Hospital Essen, 45122 Essen, Germany.
Ulrike ScharaDepartment of Pediatric Neurology, Children's Hospital Essen, 45122 Essen, Germany.
Patrick GernerDepartment of Pediatric Gastroenterology, Hepatology and Endoscopy, University Hospital, 79110 Freiburg, Germany.
Marjolein A W van den BoogertDepartment of Vascular Medicine, Academic Medical Center, 1105 AZ Amsterdam, the Netherlands.
Adriaan G HolleboomDepartment of Vascular Medicine, Academic Medical Center, 1105 AZ Amsterdam, the Netherlands.
Marie-Cécile NassogneCliniques Universitaires Saint-Luc, Université Catholique de Louvain, 1200 Woluwe-Saint-Lambert, Belgium.
Etienne SokalCliniques Universitaires Saint-Luc, Université Catholique de Louvain, 1200 Woluwe-Saint-Lambert, Belgium.
Jody SalomonDepartment of Gastroenterology and Hepatology, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Geert van den BogaartDepartment of Tumor Immunology, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Joost P H DrenthDepartment of Gastroenterology and Hepatology, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Martijn A HuynenCenter for Molecular and Biomolecular Informatics, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Joris A VeltmanDepartment of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Clinical Genetics, Maastricht University Medical Centre, 6229 HX Maastricht, the Netherlands.
Ron A WeversTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Eva MoravaDepartment of Pediatrics, University of Leuven, 3000 Leuven, Belgium; Hayward Genetics Center, Department of Pediatrics, Tulane University Medical School, New Orleans, LA 70112, USA.
Gert MatthijsDepartment of Pediatrics, University of Leuven, 3000 Leuven, Belgium.
François FoulquierCNRS-UMR 8576, Structural and Functional Glycobiology Unit, Federation of Research Structural & Functional Biochemistry of Biomolecular Assemblies (FRABio), University of Lille, 59655 Villeneuve d'Ascq, France.
Thorsten MarquardtDepartment of Pediatrics, Westfälische Wilhelms-Universität Münster, 48149 Münster, Germany.
Dirk J LefeberTranslational Metabolic Laboratory, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Department of Neurology, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands. Electronic address: dirk.lefeber@radboudumc.nl.
Radboud University Nijmegen · NLCentre for Biomedical Network Research on Rare Diseases · ESKU Leuven · BEUniversity of Münster · DEAmsterdam UMC Location University of Amsterdam · NLCentre National de la Recherche Scientifique · FRCliniques Universitaires Saint-Luc · BEEssen University Hospital · DEHôpital Femme Mère Enfant · FRCentro Hospitalar do Porto · PTHospitais da Universidade de Coimbra · PTKlinik und Poliklinik für Psychosomatik und Psychotherapie · DEOsaka International Cancer Institute · JPThe University of Osaka · JPTulane University · USUniversity Medical Center Freiburg · DEUniversity of Duisburg-Essen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disorders of Golgi homeostasis form an emerging group of genetic defects. The highly heterogeneous clinical spectrum is not explained by our current understanding of the underlying cell-biological processes in the Golgi. Therefore, uncovering genetic defects and annotating gene function are challenging. Exome sequencing in a family with three siblings affected by abnormal Golgi glycosylation revealed a homozygous missense mutation, c.92T>C (p.Leu31Ser), in coiled-coil domain containing 115 (CCDC115), the function of which is unknown. The same mutation was identified in three unrelated families, and in one family it was compound heterozygous in combination with a heterozygous deletion of CCDC115. An additional homozygous missense mutation, c.31G>T (p.Asp11Tyr), was found in a family with two affected siblings. All individuals displayed a storage-disease-like phenotype involving hepatosplenomegaly, which regressed with age, highly elevated bone-derived alkaline phosphatase, elevated aminotransferases, and elevated cholesterol, in combination with abnormal copper metabolism and neurological symptoms. Two individuals died of liver failure, and one individual was successfully treated by liver transplantation. Abnormal N- and mucin type O-glycosylation was found on serum proteins, and reduced metabolic labeling of sialic acids was found in fibroblasts, which was restored after complementation with wild-type CCDC115. PSI-BLAST homology detection revealed reciprocal homology with Vma22p, the yeast V-ATPase assembly factor located in the endoplasmic reticulum (ER). Human CCDC115 mainly localized to the ERGIC and to COPI vesicles, but not to the ER. These data, in combination with the phenotypic spectrum, which is distinct from that associated with defects in V-ATPase core subunits, suggest a more general role for CCDC115 in Golgi trafficking. Our study reveals CCDC115 deficiency as a disorder of Golgi homeostasis that can be readily identified via screening for abnormal glycosylation in plasma.

Indexed as

HomeostasisAmino Acid SequenceChildChild, PreschoolCloning, MolecularEndoplasmic ReticulumExomeFemaleFibroblastsGlycosylationGolgi ApparatusHeLa CellsHeterozygoteHumansInfantMaleNerve Tissue Proteinsalkaline phosphataseglycosylationGolgi homeostasishepatosplenomegalyV-ATPase assemblyVma22p

Identifiers

PMID26833332
PMCPMC4746332
OpenAlexW2271052301

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